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Molecular & Cellular Proteomics 1:376-386, 2002.
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C.-C. Tsou, Y.-H. Tsui, Y.-H. Yian, Y.-J. Chen, H.-Y. Yang, C.-Y. Yu, K.-S. Lynn, Y.-J. Chen, T.-Y. Sung, and W.-L. Hsu MaXIC-Q Web: a fully automated web service using statistical and computational methods for protein quantitation based on stable isotope labeling and LC-MS Nucleic Acids Res., July 1, 2009; 37(suppl_2): W661 - W669. [Abstract] [Full Text] [PDF] |
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L. E. McNamara, M. J. Dalby, M. O. Riehle, and R. Burchmore Fluorescence two-dimensional difference gel electrophoresis for biomaterial applications J R Soc Interface, July 1, 2009; (2009) rsif.2009.0177.focusv1. [Abstract] [Full Text] [PDF] |
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F. Butter, M. Scheibe, M. Morl, and M. Mann Unbiased RNA-protein interaction screen by quantitative proteomics PNAS, June 30, 2009; 106(26): 10626 - 10631. [Abstract] [Full Text] [PDF] |
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F. Frohlich, K. Moreira, P. S. Aguilar, N. C. Hubner, M. Mann, P. Walter, and T. C. Walther A genome-wide screen for genes affecting eisosomes reveals Nce102 function in sphingolipid signaling J. Cell Biol., June 29, 2009; 185(7): 1227 - 1242. [Abstract] [Full Text] [PDF] |
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S. L. Hall, S. Hester, J. L. Griffin, K. S. Lilley, and A. P. Jackson The Organelle Proteome of the DT40 Lymphocyte Cell Line Mol. Cell. Proteomics, June 1, 2009; 8(6): 1295 - 1305. [Abstract] [Full Text] [PDF] |
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R. Leth-Larsen, R. Lund, H. V. Hansen, A.-V. Laenkholm, D. Tarin, O. N. Jensen, and H. J. Ditzel Metastasis-related Plasma Membrane Proteins of Human Breast Cancer Cells Identified by Comparative Quantitative Mass Spectrometry Mol. Cell. Proteomics, June 1, 2009; 8(6): 1436 - 1449. [Abstract] [Full Text] [PDF] |
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B. van Breukelen, H. W. P. van den Toorn, M. M. Drugan, and A. J. R. Heck StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry Bioinformatics, June 1, 2009; 25(11): 1472 - 1473. [Abstract] [Full Text] [PDF] |
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T. Arnesen, P. Van Damme, B. Polevoda, K. Helsens, R. Evjenth, N. Colaert, J. E. Varhaug, J. Vandekerckhove, J. R. Lillehaug, F. Sherman, et al. Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans PNAS, May 19, 2009; 106(20): 8157 - 8162. [Abstract] [Full Text] [PDF] |
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T. A. Prokhorova, K. T. G. Rigbolt, P. T. Johansen, J. Henningsen, I. Kratchmarova, M. Kassem, and B. Blagoev Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and Quantitative Comparison of the Membrane Proteomes of Self-renewing and Differentiating Human Embryonic Stem Cells Mol. Cell. Proteomics, May 1, 2009; 8(5): 959 - 970. [Abstract] [Full Text] [PDF] |
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I. Jorge, P. Navarro, P. Martinez-Acedo, E. Nunez, H. Serrano, A. Alfranca, J. M. Redondo, and J. Vazquez Statistical Model to Analyze Quantitative Proteomics Data Obtained by 18O/16O Labeling and Linear Ion Trap Mass Spectrometry: Application to the Study of Vascular Endothelial Growth Factor-induced Angiogenesis in Endothelial Cells Mol. Cell. Proteomics, May 1, 2009; 8(5): 1130 - 1149. [Abstract] [Full Text] [PDF] |
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C. Hundertmark, R. Fischer, T. Reinl, S. May, F. Klawonn, and L. Jansch MS-specific noise model reveals the potential of iTRAQ in quantitative proteomics Bioinformatics, April 15, 2009; 25(8): 1004 - 1011. [Abstract] [Full Text] [PDF] |
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Y. Gao, R. D. Holland, and L.-R. Yu Quantitative proteomics for drug toxicity Brief Funct Genomic Proteomic, April 7, 2009; (2009) elp006v1. [Abstract] [Full Text] [PDF] |
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S.-E. Ong, M. Schenone, A. A. Margolin, X. Li, K. Do, M. K. Doud, D. R. Mani, L. Kuai, X. Wang, J. L. Wood, et al. Identifying the proteins to which small-molecule probes and drugs bind in cells PNAS, March 24, 2009; 106(12): 4617 - 4622. [Abstract] [Full Text] [PDF] |
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F. E. Boccalatte, C. Voena, C. Riganti, A. Bosia, L. D'Amico, L. Riera, M. Cheng, B. Ruggeri, O. N. Jensen, V. L. Goss, et al. The enzymatic activity of 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase is enhanced by NPM-ALK: new insights in ALK-mediated pathogenesis and the treatment of ALCL Blood, March 19, 2009; 113(12): 2776 - 2790. [Abstract] [Full Text] [PDF] |
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P. Dai, S. Y. Jeong, Y. Yu, T. Leng, W. Wu, L. Xie, and X. Chen Modulation of TLR Signaling by Multiple MyD88-Interacting Partners Including Leucine-Rich Repeat Fli-I-Interacting Proteins J. Immunol., March 15, 2009; 182(6): 3450 - 3460. [Abstract] [Full Text] [PDF] |
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L. Ruiz, Y. Coute, B. Sanchez, C. G. de los Reyes-Gavilan, J.-C. Sanchez, and A. Margolles The cell-envelope proteome of Bifidobacterium longum in an in vitro bile environment Microbiology, March 1, 2009; 155(3): 957 - 967. [Abstract] [Full Text] [PDF] |
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X. Wei and L. Li Comparative glycoproteomics: approaches and applications Brief Funct Genomic Proteomic, March 1, 2009; 8(2): 104 - 113. [Abstract] [Full Text] [PDF] |
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X. Ye, B. Luke, T. Andresson, and J. Blonder 18O Stable Isotope Labeling in MS-based Proteomics Brief Funct Genomic Proteomic, March 1, 2009; 8(2): 136 - 144. [Abstract] [Full Text] [PDF] |
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K. G. Kline, G. L. Finney, and C. C. Wu Quantitative strategies to fuel the merger of discovery and hypothesis-driven shotgun proteomics Brief Funct Genomic Proteomic, March 1, 2009; 8(2): 114 - 125. [Abstract] [Full Text] [PDF] |
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V. Gagnaire, J. Jardin, G. Jan, and S. Lortal Invited review: Proteomics of milk and bacteria used in fermented dairy products: From qualitative to quantitative advances J Dairy Sci, March 1, 2009; 92(3): 811 - 825. [Abstract] [Full Text] [PDF] |
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C. Pan, C. Kumar, S. Bohl, U. Klingmueller, and M. Mann Comparative Proteomic Phenotyping of Cell Lines and Primary Cells to Assess Preservation of Cell Type-specific Functions Mol. Cell. Proteomics, March 1, 2009; 8(3): 443 - 450. [Abstract] [Full Text] [PDF] |
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S. Hanke and M. Mann The Phosphotyrosine Interactome of the Insulin Receptor Family and Its Substrates IRS-1 and IRS-2 Mol. Cell. Proteomics, March 1, 2009; 8(3): 519 - 534. [Abstract] [Full Text] [PDF] |
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T. Heckel, C. Czupalla, A. I. Expirto Santo, M. Anitei, M. Arantzazu Sanchez-Fernandez, K. Mosch, E. Krause, and B. Hoflack Src-dependent repression of ARF6 is required to maintain podosome-rich sealing zones in bone-digesting osteoclasts PNAS, February 3, 2009; 106(5): 1451 - 1456. [Abstract] [Full Text] [PDF] |
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M. Oyama, H. Kozuka-Hata, S. Tasaki, K. Semba, S. Hattori, S. Sugano, J.-i. Inoue, and T. Yamamoto Temporal Perturbation of Tyrosine Phosphoproteome Dynamics Reveals the System-wide Regulatory Networks Mol. Cell. Proteomics, February 1, 2009; 8(2): 226 - 231. [Abstract] [Full Text] [PDF] |
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P. Van Damme, S. Maurer-Stroh, K. Plasman, J. Van Durme, N. Colaert, E. Timmerman, P.-J. De Bock, M. Goethals, F. Rousseau, J. Schymkowitz, et al. Analysis of Protein Processing by N-terminal Proteomics Reveals Novel Species-specific Substrate Determinants of Granzyme B Orthologs Mol. Cell. Proteomics, February 1, 2009; 8(2): 258 - 272. [Abstract] [Full Text] [PDF] |
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H. Roelofsen, M. Dijkstra, D. Weening, M. P. de Vries, A. Hoek, and R. J. Vonk Comparison of Isotope-labeled Amino Acid Incorporation Rates (CILAIR) Provides a Quantitative Method to Study Tissue Secretomes Mol. Cell. Proteomics, February 1, 2009; 8(2): 316 - 324. [Abstract] [Full Text] [PDF] |
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G. Mittler, F. Butter, and M. Mann A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements Genome Res., February 1, 2009; 19(2): 284 - 293. [Abstract] [Full Text] [PDF] |
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S. Dhungana, B. A. Merrick, K. B. Tomer, and M. B. Fessler Quantitative Proteomics Analysis of Macrophage Rafts Reveals Compartmentalized Activation of the Proteasome and of Proteasome-mediated ERK Activation in Response to Lipopolysaccharide Mol. Cell. Proteomics, January 1, 2009; 8(1): 201 - 213. [Abstract] [Full Text] [PDF] |
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H. Choi, D. Fermin, and A. I. Nesvizhskii Significance Analysis of Spectral Count Data in Label-free Shotgun Proteomics Mol. Cell. Proteomics, December 1, 2008; 7(12): 2373 - 2385. [Abstract] [Full Text] [PDF] |
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E. Szajli, T. Feher, and K. F. Medzihradszky Investigating the Quantitative Nature of MALDI-TOF MS Mol. Cell. Proteomics, December 1, 2008; 7(12): 2410 - 2418. [Abstract] [Full Text] [PDF] |
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M. Lamkanfi, T.-D. Kanneganti, P. Van Damme, T. Vanden Berghe, I. Vanoverberghe, J. Vandekerckhove, P. Vandenabeele, K. Gevaert, and G. Nunez Targeted Peptidecentric Proteomics Reveals Caspase-7 as a Substrate of the Caspase-1 Inflammasomes Mol. Cell. Proteomics, December 1, 2008; 7(12): 2350 - 2363. [Abstract] [Full Text] [PDF] |
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A. R. Kristensen, S. Schandorff, M. Hoyer-Hansen, M. O. Nielsen, M. Jaattela, J. Dengjel, and J. S. Andersen Ordered Organelle Degradation during Starvation-induced Autophagy Mol. Cell. Proteomics, December 1, 2008; 7(12): 2419 - 2428. [Abstract] [Full Text] [PDF] |
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M. Mann and N. L. Kelleher Mass Spectrometry Special Feature: Precision proteomics: The case for high resolution and high mass accuracy PNAS, November 25, 2008; 105(47): 18132 - 18138. [Abstract] [Full Text] [PDF] |
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L. Trinkle-Mulcahy, S. Boulon, Y. W. Lam, R. Urcia, F.-M. Boisvert, F. Vandermoere, N. A. Morrice, S. Swift, U. Rothbauer, H. Leonhardt, et al. Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes J. Cell Biol., October 20, 2008; 183(2): 223 - 239. [Abstract] [Full Text] [PDF] |
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H. Song, W. Kong, N. Weatherspoon, G. Qin, W. Tyler, J. Turk, R. Curtiss III, and Y. Shi Modulation of the Regulatory Activity of Bacterial Two-component Systems by SlyA J. Biol. Chem., October 17, 2008; 283(42): 28158 - 28168. [Abstract] [Full Text] [PDF] |
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S. P. Mirza and M. Olivier Methods and approaches for the comprehensive characterization and quantification of cellular proteomes using mass spectrometry Physiol Genomics, October 8, 2008; 33(1): 3 - 11. [Abstract] [Full Text] [PDF] |
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E. W. Deutsch, H. Lam, and R. Aebersold Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics Physiol Genomics, October 8, 2008; 33(1): 18 - 25. [Abstract] [Full Text] [PDF] |
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L. Liao, S. K. Park, T. Xu, P. Vanderklish, and J. R. Yates III Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice PNAS, October 7, 2008; 105(40): 15281 - 15286. [Abstract] [Full Text] [PDF] |
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M. Skiba, T. C. Mettenleiter, and A. Karger Quantitative Whole-Cell Proteome Analysis of Pseudorabies Virus-Infected Cells J. Virol., October 1, 2008; 82(19): 9689 - 9699. [Abstract] [Full Text] [PDF] |
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V. Zabrouskov, Y. Ge, J. Schwartz, and J. W. Walker Unraveling Molecular Complexity of Phosphorylated Human Cardiac Troponin I by Top Down Electron Capture Dissociation/Electron Transfer Dissociation Mass Spectrometry Mol. Cell. Proteomics, October 1, 2008; 7(10): 1838 - 1849. [Abstract] [Full Text] [PDF] |
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C.-L. Han, C.-W. Chien, W.-C. Chen, Y.-R. Chen, C.-P. Wu, H. Li, and Y.-J. Chen A Multiplexed Quantitative Strategy for Membrane Proteomics: Opportunities for Mining Therapeutic Targets for Autosomal Dominant Polycystic Kidney Disease Mol. Cell. Proteomics, October 1, 2008; 7(10): 1983 - 1997. [Abstract] [Full Text] [PDF] |
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A. Doucet, G. S. Butler, D. Rodriguez, A. Prudova, and C. M. Overall Metadegradomics: Toward in Vivo Quantitative Degradomics of Proteolytic Post-translational Modifications of the Cancer Proteome Mol. Cell. Proteomics, October 1, 2008; 7(10): 1925 - 1951. [Abstract] [Full Text] [PDF] |
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U. Kruse, M. Bantscheff, G. Drewes, and C. Hopf Chemical and Pathway Proteomics: Powerful Tools for Oncology Drug Discovery and Personalized Health Care Mol. Cell. Proteomics, October 1, 2008; 7(10): 1887 - 1901. [Abstract] [Full Text] [PDF] |
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K. Ota, K. Kito, S. Okada, and T. Ito A proteomic screen reveals the mitochondrial outer membrane protein Mdm34p as an essential target of the F-box protein Mdm30p Genes Cells, October 1, 2008; 13(10): 1075 - 1085. [Abstract] [Full Text] [PDF] |
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G. W. Becker Stable isotopic labeling of proteins for quantitative proteomic applications Brief Funct Genomic Proteomic, September 1, 2008; 7(5): 371 - 382. [Abstract] [Full Text] [PDF] |
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A. Lebreton, J.-C. Rousselle, P. Lenormand, A. Namane, A. Jacquier, M. Fromont-Racine, and C. Saveanu 60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes Nucleic Acids Res., September 1, 2008; 36(15): 4988 - 4999. [Abstract] [Full Text] [PDF] |
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S. C. Bendall, C. Hughes, M. H. Stewart, B. Doble, M. Bhatia, and G. A. Lajoie Prevention of Amino Acid Conversion in SILAC Experiments with Embryonic Stem Cells Mol. Cell. Proteomics, September 1, 2008; 7(9): 1587 - 1597. [Abstract] [Full Text] [PDF] |
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M. Bantscheff, M. Boesche, D. Eberhard, T. Matthieson, G. Sweetman, and B. Kuster Robust and Sensitive iTRAQ Quantification on an LTQ Orbitrap Mass Spectrometer Mol. Cell. Proteomics, September 1, 2008; 7(9): 1702 - 1713. [Abstract] [Full Text] [PDF] |
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P. Mertins, H. C. Eberl, J. Renkawitz, J. V. Olsen, M. L. Tremblay, M. Mann, A. Ullrich, and H. Daub Investigation of Protein-tyrosine Phosphatase 1B Function by Quantitative Proteomics Mol. Cell. Proteomics, September 1, 2008; 7(9): 1763 - 1777. [Abstract] [Full Text] [PDF] |
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R. Raijmakers, C. R. Berkers, A. de Jong, H. Ovaa, A. J. R. Heck, and S. Mohammed Automated Online Sequential Isotope Labeling for Protein Quantitation Applied to Proteasome Tissue-specific Diversity Mol. Cell. Proteomics, September 1, 2008; 7(9): 1755 - 1762. [Abstract] [Full Text] [PDF] |
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H. Luo, Y. Li, J.-J. Mu, J. Zhang, T. Tonaka, Y. Hamamori, S. Y. Jung, Y. Wang, and J. Qin Regulation of Intra-S Phase Checkpoint by Ionizing Radiation (IR)-dependent and IR-independent Phosphorylation of SMC3 J. Biol. Chem., July 11, 2008; 283(28): 19176 - 19183. [Abstract] [Full Text] [PDF] |
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C. P. Albuquerque, M. B. Smolka, S. H. Payne, V. Bafna, J. Eng, and H. Zhou A Multidimensional Chromatography Technology for In-depth Phosphoproteome Analysis Mol. Cell. Proteomics, July 1, 2008; 7(7): 1389 - 1396. [Abstract] [Full Text] [PDF] |
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D. S. Spellman, K. Deinhardt, C. C. Darie, M. V. Chao, and T. A. Neubert Stable Isotopic Labeling by Amino Acids in Cultured Primary Neurons: Application to Brain-derived Neurotrophic Factor-dependent Phosphotyrosine-associated Signaling Mol. Cell. Proteomics, June 1, 2008; 7(6): 1067 - 1076. [Abstract] [Full Text] [PDF] |
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F. Mousson, A. Kolkman, W. W. M. P. Pijnappel, H. Th. M. Timmers, and A. J. R. Heck Quantitative Proteomics Reveals Regulation of Dynamic Components within TATA-binding Protein (TBP) Transcription Complexes Mol. Cell. Proteomics, May 1, 2008; 7(5): 845 - 852. [Abstract] [Full Text] [PDF] |
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M. Colzani, F. Schutz, A. Potts, P. Waridel, and M. Quadroni Relative Protein Quantification by Isobaric SILAC with Immonium Ion Splitting (ISIS) Mol. Cell. Proteomics, May 1, 2008; 7(5): 927 - 937. [Abstract] [Full Text] [PDF] |
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C. M.R. Lacerda, L. Xin, I. Rogers, and K. F. Reardon Analysis of iTRAQ data using Mascot and Peaks quantification algorithms Brief Funct Genomic Proteomic, April 4, 2008; (2008) eln017v1. [Abstract] [Full Text] [PDF] |
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J. Graumann, N. C. Hubner, J. B. Kim, K. Ko, M. Moser, C. Kumar, J. Cox, H. Scholer, and M. Mann Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and Proteome Quantitation of Mouse Embryonic Stem Cells to a Depth of 5,111 Proteins Mol. Cell. Proteomics, April 1, 2008; 7(4): 672 - 683. [Abstract] [Full Text] [PDF] |
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A. Panchaud, J. Hansson, M. Affolter, R. Bel Rhlid, S. Piu, P. Moreillon, and M. Kussmann ANIBAL, Stable Isotope-based Quantitative Proteomics by Aniline and Benzoic Acid Labeling of Amino and Carboxylic Groups Mol. Cell. Proteomics, April 1, 2008; 7(4): 800 - 812. [Abstract] [Full Text] [PDF] |
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J. W. H. Wong, M. J. Sullivan, and G. Cagney Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments Brief Bioinform, March 1, 2008; 9(2): 156 - 165. [Abstract] [Full Text] [PDF] |
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D. A. Stead, N. W. Paton, P. Missier, S. M. Embury, C. Hedeler, B. Jin, A. J. P. Brown, and A. Preece Information quality in proteomics Brief Bioinform, March 1, 2008; 9(2): 174 - 188. [Abstract] [Full Text] [PDF] |
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G. G. Xiao, M. Garg, S. Lim, D. Wong, V. L. Go, and W.-N. P. Lee Determination of protein synthesis in vivo using labeling from deuterated water and analysis of MALDI-TOF spectrum J Appl Physiol, March 1, 2008; 104(3): 828 - 836. [Abstract] [Full Text] [PDF] |
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J. Villanueva, A. Nazarian, K. Lawlor, S. S. Yi, R. J. Robbins, and P. Tempst A Sequence-specific Exopeptidase Activity Test (SSEAT) for "Functional" Biomarker Discovery Mol. Cell. Proteomics, March 1, 2008; 7(3): 509 - 518. [Abstract] [Full Text] [PDF] |
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M. Kruger, I. Kratchmarova, B. Blagoev, Y.-H. Tseng, C. R. Kahn, and M. Mann Dissection of the insulin signaling pathway via quantitative phosphoproteomics PNAS, February 19, 2008; 105(7): 2451 - 2456. [Abstract] [Full Text] [PDF] |
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D. Nanavati, M. Gucek, J. L. S. Milne, S. Subramaniam, and S. P. Markey Stoichiometry and Absolute Quantification of Proteins with Mass Spectrometry Using Fluorescent and Isotope-labeled Concatenated Peptide Standards Mol. Cell. Proteomics, February 1, 2008; 7(2): 442 - 447. [Abstract] [Full Text] [PDF] |
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A. Guo, J. Villen, J. Kornhauser, K. A. Lee, M. P. Stokes, K. Rikova, A. Possemato, J. Nardone, G. Innocenti, R. Wetzel, et al. Signaling networks assembled by oncogenic EGFR and c-Met PNAS, January 15, 2008; 105(2): 692 - 697. [Abstract] [Full Text] [PDF] |
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F. Diella, C. M. Gould, C. Chica, A. Via, and T. J. Gibson Phospho.ELM: a database of phosphorylation sites update 2008 Nucleic Acids Res., January 11, 2008; 36(suppl_1): D240 - D244. [Abstract] [Full Text] [PDF] |
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J. J. Pesavento, H. Yang, N. L. Kelleher, and C. A. Mizzen Certain and Progressive Methylation of Histone H4 at Lysine 20 during the Cell Cycle Mol. Cell. Biol., January 1, 2008; 28(1): 468 - 486. [Abstract] [Full Text] [PDF] |
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R. Hebeler, S. Oeljeklaus, K. A. Reidegeld, M. Eisenacher, C. Stephan, B. Sitek, K. Stuhler, H. E. Meyer, M. J. G. Sturre, P. P. Dijkwel, et al. Study of Early Leaf Senescence in Arabidopsis thaliana by Quantitative Proteomics Using Reciprocal 14N/15N Labeling and Difference Gel Electrophoresis Mol. Cell. Proteomics, January 1, 2008; 7(1): 108 - 120. [Abstract] [Full Text] [PDF] |
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M. L. Miller, S. Hanke, A. M. Hinsby, C. Friis, S. Brunak, M. Mann, and N. Blom Motif Decomposition of the Phosphotyrosine Proteome Reveals a New N-terminal Binding Motif for SHIP2 Mol. Cell. Proteomics, January 1, 2008; 7(1): 181 - 192. [Abstract] [Full Text] [PDF] |
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J.-W. Yang, H. Vacher, K.-S. Park, E. Clark, and J. S. Trimmer Trafficking-dependent phosphorylation of Kv1.2 regulates voltage-gated potassium channel cell surface expression PNAS, December 11, 2007; 104(50): 20055 - 20060. [Abstract] [Full Text] [PDF] |
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M. P. Stokes, J. Rush, J. MacNeill, J. M. Ren, K. Sprott, J. Nardone, V. Yang, S. A. Beausoleil, S. P. Gygi, M. Livingstone, et al. Profiling of UV-induced ATM/ATR signaling pathways PNAS, December 11, 2007; 104(50): 19855 - 19860. [Abstract] [Full Text] [PDF] |
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T. Pisitkun, J. D. Hoffert, M.-J. Yu, and M. A. Knepper Tandem Mass Spectrometry in Physiology Physiology, December 1, 2007; 22(6): 390 - 400. [Abstract] [Full Text] [PDF] |
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H. Keshishian, T. Addona, M. Burgess, E. Kuhn, and S. A. Carr Quantitative, Multiplexed Assays for Low Abundance Proteins in Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution Mol. Cell. Proteomics, December 1, 2007; 6(12): 2212 - 2229. [Abstract] [Full Text] [PDF] |
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D. Bonenfant, H. Towbin, M. Coulot, P. Schindler, D. R. Mueller, and J. van Oostrum Analysis of Dynamic Changes in Post-translational Modifications of Human Histones during Cell Cycle by Mass Spectrometry Mol. Cell. Proteomics, November 1, 2007; 6(11): 1917 - 1932. [Abstract] [Full Text] [PDF] |
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L.-Y. Tang, N. Deng, L.-S. Wang, J. Dai, Z.-L. Wang, X.-S. Jiang, S.-J. Li, L. Li, Q.-H. Sheng, D.-Q. Wu, et al. Quantitative Phosphoproteome Profiling of Wnt3a-mediated Signaling Network: Indicating the Involvement of Ribonucleoside-diphosphate Reductase M2 Subunit Phosphorylation at Residue Serine 20 in Canonical Wnt Signal Transduction Mol. Cell. Proteomics, November 1, 2007; 6(11): 1952 - 1967. [Abstract] [Full Text] [PDF] |
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P. A. Everley, C. A. Gartner, W. Haas, A. Saghatelian, J. E. Elias, B. F. Cravatt, B. R. Zetter, and S. P. Gygi Assessing Enzyme Activities Using Stable Isotope Labeling and Mass Spectrometry Mol. Cell. Proteomics, October 1, 2007; 6(10): 1771 - 1777. [Abstract] [Full Text] [PDF] |
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B.-J. M. Webb-Robertson and W. R. Cannon Current trends in computational inference from mass spectrometry-based proteomics Brief Bioinform, September 1, 2007; 8(5): 304 - 317. [Abstract] [Full Text] [PDF] |
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Y. Coute, C. Hernandez, R. D. Appel, J.-C. Sanchez, and A. Margolles Labeling of Bifidobacterium longum Cells with 13C-Substituted Leucine for Quantitative Proteomic Analyses Appl. Envir. Microbiol., September 1, 2007; 73(17): 5653 - 5656. [Abstract] [Full Text] [PDF] |
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D. Bouyssie, A. G. de Peredo, E. Mouton, R. Albigot, L. Roussel, N. Ortega, C. Cayrol, O. Burlet-Schiltz, J.-P. Girard, and B. Monsarrat Mascot File Parsing and Quantification (MFPaQ), a New Software to Parse, Validate, and Quantify Proteomics Data Generated by ICAT and SILAC Mass Spectrometric Analyses: Application To the Proteomics Study of Membrane Proteins from Primary Human Endothelial Cells Mol. Cell. Proteomics, September 1, 2007; 6(9): 1621 - 1637. [Abstract] [Full Text] [PDF] |
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P. R. Cutillas and B. Vanhaesebroeck Quantitative Profile of Five Murine Core Proteomes Using Label-free Functional Proteomics Mol. Cell. Proteomics, September 1, 2007; 6(9): 1560 - 1573. [Abstract] [Full Text] [PDF] |
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D. B. McClatchy, L. Liao, S. K. Park, J. D. Venable, and J. R. Yates Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development Genome Res., September 1, 2007; 17(9): 1378 - 1388. [Abstract] [Full Text] [PDF] |
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J. Rivers, D. M. Simpson, D. H. L. Robertson, S. J. Gaskell, and R. J. Beynon Absolute Multiplexed Quantitative Analysis of Protein Expression during Muscle Development Using QconCAT Mol. Cell. Proteomics, August 1, 2007; 6(8): 1416 - 1427. [Abstract] [Full Text] [PDF] |
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S. McIlwain, D. Page, E. L. Huttlin, and M. R. Sussman Using dynamic programming to create isotopic distribution maps from mass spectra Bioinformatics, July 1, 2007; 23(13): i328 - i336. [Abstract] [Full Text] [PDF] |
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J. J. Benschop, S. Mohammed, M. O'Flaherty, A. J. R. Heck, M. Slijper, and F. L. H. Menke Quantitative Phosphoproteomics of Early Elicitor Signaling in Arabidopsis Mol. Cell. Proteomics, July 1, 2007; 6(7): 1198 - 1214. [Abstract] [Full Text] [PDF] |
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K. L. Maxwell and L. Frappier Viral Proteomics Microbiol. Mol. Biol. Rev., June 1, 2007; 71(2): 398 - 411. [Abstract] [Full Text] [PDF] |
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C. S. Lane, Y. Wang, R. Betts, W. J. Griffiths, and L. H. Patterson Comparative Cytochrome P450 Proteomics in the Livers of Immunodeficient Mice Using 18O Stable Isotope Labeling Mol. Cell. Proteomics, June 1, 2007; 6(6): 953 - 962. [Abstract] [Full Text] [PDF] |
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J. Jin, G. J. Li, J. Davis, D. Zhu, Y. Wang, C. Pan, and J. Zhang Identification of Novel Proteins Associated with Both {alpha}-Synuclein and DJ-1 Mol. Cell. Proteomics, May 1, 2007; 6(5): 845 - 859. [Abstract] [Full Text] [PDF] |
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J. P. C. Vissers, J. I. Langridge, and J. M. F. G. Aerts Analysis and Quantification of Diagnostic Serum Markers and Protein Signatures for Gaucher Disease Mol. Cell. Proteomics, May 1, 2007; 6(5): 755 - 766. [Abstract] [Full Text] [PDF] |
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