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Originally published In Press as doi:10.1074/mcp.M900038-MCP200 on June 13, 2009.
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Molecular & Cellular Proteomics 8:2119-2130, 2009.
© 2009 by The American Society for Biochemistry and Molecular Biology, Inc.


Research

Evidence for a Shared Nuclear Pore Complex Architecture That Is Conserved from the Last Common Eukaryotic Ancestor*,Formula

Jeffrey A. DeGrasse{ddagger}, Kelly N. DuBois§, Damien Devos, T. Nicolai Siegel||, Andrej Sali**, Mark C. Field§, Michael P. Rout{ddagger}{ddagger} and Brian T. Chait{ddagger},§§

From the Laboratories of {ddagger}Mass Spectrometry and Gaseous Ion Chemistry,
||Molecular Parasitology, and
{ddagger}{ddagger}Cellular and Structural Biology, The Rockefeller University, New York, New York 10065,
§Department of Pathology, University of Cambridge, The Molteno Building, Tennis Court Road, Cambridge CB2 1QP, United Kingdom,
¶Structural Bioinformatics, European Molecular Biology Laboratory, Meyerhofstrasse 1, D-69117 Heidelberg, Germany, and
**Department of Biopharmaceutical Sciences, University of California, San Francisco, California 94158

The nuclear pore complex (NPC) is a macromolecular assembly embedded within the nuclear envelope that mediates bidirectional exchange of material between the nucleus and cytoplasm. Our recent work on the yeast NPC has revealed a simple modularity in its architecture and suggested a common evolutionary origin of the NPC and vesicle coating complexes in a progenitor protocoatomer. However, detailed compositional and structural information is currently only available for vertebrate and yeast NPCs, which are evolutionarily closely related. Hence our understanding of NPC composition in a full evolutionary context is sparse. Moreover despite the ubiquitous nature of the NPC, sequence searches in distant taxa have identified surprisingly few NPC components, suggesting that much of the NPC may not be conserved. Thus, to gain a broad perspective on the origins and evolution of the NPC, we performed proteomics analyses of NPC-containing fractions from a divergent eukaryote (Trypanosoma brucei) and obtained a comprehensive inventory of its nucleoporins. Strikingly trypanosome nucleoporins clearly share with metazoa and yeast their fold type, domain organization, composition, and modularity. Overall these data provide conclusive evidence that the majority of NPC architecture is indeed conserved throughout the Eukaryota and was already established in the last common eukaryotic ancestor. These findings strongly support the hypothesis that NPCs share a common ancestry with vesicle coating complexes and that both were established very early in eukaryotic evolution.


§§ To whom correspondence should be addressed: Laboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University, 1230 York Ave., New York, NY 10065. E-mail: chait{at}rockefeller.edu.


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Eukaryot CellHome page
L. J. Terry and S. R. Wente
Flexible Gates: Dynamic Topologies and Functions for FG Nucleoporins in Nucleocytoplasmic Transport
Eukaryot. Cell, December 1, 2009; 8(12): 1814 - 1827.
[Abstract] [Full Text] [PDF]




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