The discovery that many inherited diseases are linked to interacting nuclear envelope proteins has raised the possibility that human genetics studies could be assisted by a fusion with proteomics. Two principles could be applied. In the first, an organelle associated with a genetically variable disease is analyzed by proteomics to determine its protein complement. The chromosomal locations of the genes encoding these proteins are then determined. If a related disease is linked to a large chromosomal region that includes a gene identified in the organelle, then that gene has an increased likelihood of causing the disease. Directly sequencing this allele from patient samples might speed identification compared to further genetic linkage studies, as has been demonstrated for multiple diseases associated with the nuclear envelope. The second principle is that if an organelle has been implicated in the pathology of a particular disorder, then comparison of the organelle proteome from control and patient cells might highlight differences that could indicate the causative protein. The distinct, tissue-specific pathologies associated with nuclear envelope diseases suggests that many tissues will have a set of disorders linked to this organelle, and there are numerous as-yet unmapped or partially mapped syndromes that could benefit from such an approach.