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Molecular & Cellular Proteomics 6:1671-1679, 2007.
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| ABSTRACT |
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-related apoptosis in the human intestinal cell line HT-29. Comparative functional proteomics enables the characterization of each differentially expressed protein in intestinal cells in response to modifications of nutritional environment. The influence of glutamine on intestinal proteome expression in apoptotic conditions has not been studied and evaluated. This comparative proteomics study was performed in the human epithelial intestinal cell line HCT-8 under experimental apoptotic conditions to investigate the influence of glutamine on protein expression during apoptosis. The pharmaconutritional effects of glutamine were determined under 2 mM (physiological concentration) and 10 mM (pharmaconutritional concentration) conditions. About 1,800 protein spots were revealed in both conditions. Comparative assessments indicated that 28 proteins were differentially expressed significantly (i.e. at least 2-fold modulated and Student's t test with p
0.05) in response to an increase of glutamine concentration in the culture medium. Twenty-four proteins were identified by mass spectrometry and associated databases. From these proteins, 34% are involved in cell cycle and apoptosis mechanisms, 17% are involved in signal transduction, and 13% are involved in cytoskeleton organization. These data were integrated in a proposed schema of the interactome under apoptotic conditions. In conclusion, this study provides the first holistic picture of proteome modulation by glutamine in a human enterocytic cell line under apoptotic conditions and supports further evaluation of nutritional modulation of human intestinal proteome in various pathological conditions where apoptosis may be involved.
Gut mucosal homeostasis is achieved through a balance between cell proliferation, located in the crypt of Lieberkühn, and cell elimination by apoptosis, predominantly localized in both the crypt and villus compartment (7). In case of inflammatory bowel disease, the balance between proliferation and apoptosis is deregulated in inflamed or ulcerated area of gut mucosa (8).
At the molecular level, apoptosis is mainly orchestrated by the activation of the intracellular cysteine aspartate protease (caspase) cascade (9). Caspases are ubiquitously present in cells as latent precursors and constitute the molecular machinery for apoptosis (10). Two main apoptotic pathways leading to the activation of caspases have been described: the intrinsic pathway involving cytochrome c released from mitochondria and the extrinsic pathway induced by several antibodies or ligands interacting with surface-exposed death receptors such as TNF1 receptor-1. The first pathway is dependent on the process of mitochondrial outer membrane permeabilization regulated by pro- and antiapoptotic members of the Bcl-2 family (11). Concerning the extrinsic pathway, death receptor ligation leads to the formation of the death-inducing signaling complex and subsequently activation of procaspase-8 by autocatalysis (9). Both apoptosis pathways are connected notably via the proapoptotic Bid protein. In fine, caspase activation, especially caspase-3 activation, induces specific morphological and biochemical changes associated with the apoptotic cellular phenotype.
Gln could modulate apoptosis-related cellular mechanisms (12, 13). Indeed Gln up-regulates Bcl-2 and CD45RO antiapoptotic protein expression in lymphocytes and down-regulates the expression of Fas and Fas ligand proapoptotic proteins in the human T lymphocyte cell line Jurkat (14). In addition, Gln decreases both caspase-3 and caspase-8 activities in activated T cells (14).
The basic mechanisms of apoptotic signal transduction consist in quantitative and qualitative modifications of protein expression (10). Proteomics study of apoptotic cells allows us to determine the major biochemical actors and biomarkers of apoptosis under various environmental and pharmaconutritional conditions (15) including Gln supplementation (10). Consequently this study was designed to provide a holistic picture of protein modulations in Gln-treated (Gln concentration at 2 and 10 mM) human intestinal epithelial HCT-8 cells under CH11-induced apoptotic conditions.
| EXPERIMENTAL PROCEDURES |
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Protein Sample Preparation and Proteomics Assays—
All reagents and instruments used have been described in detail previously (16). Protein quantification was performed with the 2-D Quant kit (Amersham Biosciences). Total protein lysates (450 µg) were loaded and resolved using commercial 18-cm IPG (3.5–10) strips (Amersham Biosciences) for the first dimension. The second dimension was performed on vertical polyacrylamide (Sigma-Aldrich) 8–16% (w/v) gradient slab gels (18 cm x 16 cm x 1.5 mm) and was run with a Laemmli SDS discontinuous system. Proteins were detected after Coomassie Brilliant Blue G-250 (Sigma-Aldrich) staining. The gels were destained for 2 h in 10% (v/v) methanol (Sigma-Aldrich) and 1% (v/v) acetic acid (Sigma-Aldrich) solutions. Gels were run in triplicates. The replicated gels were scanned (600 dots/inch resolution, 16 bits), and images were obtained with a computing and calibrating imaging densitometer (Model GS-700, Bio-Rad) and digitalization software (Multi-Analyst PC Software for the Bio-Rad Image Analysis Systems version 1.1, Bio-Rad).
Image Analysis—
Differential analysis was performed using the ImageMasterTM 2D Platinum software version 5.0 (Amersham Biosciences) for spot detection, quantification, matching, and comparative analysis on a set of three simultaneously run gels per sample. The expression level was determined by the relative volume of each spot in the gel and expressed as %Volume (%Vol = (spot volume/
volumes of all spots resolved in the gel)). This normalized spot volume takes into account variations due to protein loading and staining by considering the total volume over all the spots present in the gel. For each condition, two classes of gels were defined, namely class A for control samples (2 mM Gln) and class B for treated samples (10 mM Gln). Only groups of spots present in all gels were considered for differential analysis.
Statistical Analysis—
To test the influence of 10 versus 2 mM Gln conditions, groupwise statistical comparisons were performed on groups of spots determined from triplicate gels both in 2 and 10 mM. Variations in abundance were calculated as the ratio of average values of %Vol for a group between the two classes. Only spots with a %Vol variation ratio greater than 2 (i.e. with significance set at ±2-fold change) in the ImageMaster 2D Platinum group report were considered relevant. The corresponding p values were determined using the Student's t test (significance level, p
0.05) after spot %Vol log transformation. This process converts the distribution of %Vol from a non-normal distribution to a normal distribution. The corresponding prerequisites for this statistical test were carefully checked (17).
Automated In-gel Digestion of Protein, MALDI-TOF Mass Spectrometric Analysis, and Database Search Based on Peptide Mass Fingerprint Spectra—
The 28 protein spots were automatically excised by cutting out from the gel using the EttanTM Spot Picker (Amersham Biosciences) and digested on the Ettan Digester (Amersham Biosciences) with proteomics grade porcine trypsin (Sigma-Aldrich). After digestion the peptide mixtures were analyzed with a Voyager-DETM MALDI-TOF mass spectrometer (Applied Biosystems, Foster City, CA) as described previously (16). All mass experiments were acquired in triplicate with
-cyano-4-hydroxycinnamic acid (LaserBio Labs, Sophia Antipolis, France) as matrix. The matrix peak relative to the CHCA A5K3H+ form at 1060.0900 Da was excluded for peptide mass fingerprint analysis. External calibration was carried out using the peptide mixture "Proteomix-Peptide calibration Mix4" (LaserBio Labs). Moreover the tryptic autodigestion ion peaks (842.5100, 1045.5642, 2225.1202, and 2678.3822 Da) were used as internal standards to validate the external calibration procedure. This method typically resulted in mass accuracies of 80–120 ppm. For interpretation, each acquired spectrum was processed using Data Explorer version 4.0 (Applied Biosystems) with an advanced base-line correction (peak width, flexibility, and degree were fixed respectively at 32, 0.5, and 0.1) and noise removal (standard deviation to remove noise fixed at 2). A monoisotopic peptide mass list prepared from spectra was generated manually and put in the MS-Fit ProteinProspector search engine version 4.0.5 (developed in the University of California San Francisco Mass Spectrometry Facility). When using accurate masses from MALDI-TOF spectra as input data, Swiss-Prot release 50.0 of May 30, 2006 as database, a 100-ppm mass accuracy, trypsin as enzyme, allowance of one incomplete proteolytic cleavage site, cysteine carbamidomethylation, acrylamide-modified cysteine, methionine oxidation, selection of species (Homo sapiens), and similarity of pI and relative molecular mass were specified in the search program.
One-dimensional Western Blot Analysis—
HCT-8 cell extracts were fractionated by 12% (w/v) SDS-PAGE, electroblotted onto nitrocellulose membranes, and incubated for 2 h with 1:5,000 (v/v) diluted rabbit anti-stathmin monoclonal antibody (Sigma-Aldrich) or with 1:1,000 (v/v) diluted goat anti-glucosidase II ß subunit polyclonal antibody (Tebu, Le Perray en Yvelines, France). After washing, the membranes were probed with 1:10,000 (v/v) diluted peroxidase-conjugated rabbit or goat anti-IgG (Sigma-Aldrich) and revealed with an ECL system (Amersham Biosciences).
| RESULTS |
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Among the 28 spots influenced by Gln, 24 could be identified and classified. These proteins account for three major cellular functions. Pie charts (Fig. 3) representing the distribution of the Gln-altered proteins under apoptotic conditions indicate that 34% of the 10 mM Gln-regulated proteins (Fig. 3) play a key role in cell cycle regulation, 17% play a key role in signal transduction, and 13% play a key role in cytoskeleton organization.
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| DISCUSSION |
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-related apoptosis-inducing ligand effects in the human intestinal cell line HT-29 (19). The Gln-derived pyrimidine pathway appears to be tightly implicated in this process (20). Gln also prevents caspase-8 activation in human intestinal epithelial T84 cells cultured with the proapoptotic Clostridium difficile toxin A (21). Another potential mechanisms of Gln action is the pathway of glutathione, an antioxidant compound that detoxifies reactive oxygen species and has potent antiapoptotic effects (22, 23). However, although the glutathione pathway is widely implicated in the antiapoptotic action of Gln on immune cells, Evans et al. (19) have demonstrated that this was not the case in the intestinal HT-29 cell line. Finally the protective effects of Gln on gut mucosa may be related to the induction of cytoprotective proteins, such as the heat shock protein (Hsp) family (24). For instance, Hsp-72 transcript and protein expression were up-regulated by Gln in IEC18 intestinal crypt-like epithelial cells during heat shock and apoptotic injury (25). In our model, we induced apoptosis by using the mouse agonistic anti-Fas IgM monoclonal antibody CH11, which activates the Fas extrinsic pathway leading to death-inducing signaling complex constitution and to caspase-8 and caspase-10 activations. Extrinsic and intrinsic pathways are interconnected through considerable cross-talk leading to cell death (9). In particular, the Bid protein activates the mitochondrial pathway after cleavage by caspase-8 and finally amplifies the apoptotic process (9). The intrinsic pathway involves the formation of the heptameric apoptosome complex. In fact, once cytochrome c is released from mitochondria, it can bind the Apaf-1 protein and then recruit and activate procaspase-9 (11). The cell death regulator Aven, a novel antiapoptotic member, can bind both Bcl-xL and Apaf-1 (26). In the baby hamster kidney fibrosarcoma BHK cell line and in the human breast adenocarcinoma MCF-7 cell line, Aven interferes with the ability of Apaf-1 to self-associate and inhibits PCD induced by Apaf-1 and caspase-9 (26). Aven is broadly expressed and conserved in mammalian species (26). In addition, Aven enhances the protective antiapoptotic function of Bcl-xL in chinese hamster ovary cells (27). The present study demonstrated that 10 mM Gln up-regulates Aven expression and may therefore inhibit apoptosome formation and the end-step of mitochondrial-mediated apoptosis.
Extrinsic and intrinsic pathways, via caspase-8 and apoptosome, respectively, finally lead to the cleavage of procaspase-3. Once activated, caspase-3 orchestrates apoptosis through the cleavage of key substrates resulting in demolition and packaging of dying cells (28). Actually we observed in the present study that 10 mM Gln down-regulated the caspase-3 precursor expression in the HCT-8 cell line. In agreement with this finding, a previous study has shown that Gln inhibits activation of caspase-3 in Jurkat T cells stimulated with phorbol myristate acetate plus ionomycin (14). Moreover in the HT-29 human carcinoma cell line, Gln prevented the activation of caspase-3 in response to treatment with the TNF-
-related apoptosis-inducing ligand (19).
Mitogen-activated protein kinase kinase kinase 7 (MAP3K7), also called transforming growth factor-ß (TGF-ß)-activating kinase 1 (TAK1), is a key enzyme of the TGF-ß pathway involved in the regulation of cell proliferation and differentiation in numerous cell types. Additionally MAP3K7 has been shown to modulate the Wnt/ß-catenin signaling pathway via the nemo-like kinase activation in Xenopus embryos and human embryonic kidney HEK293 and DLD-1 human colon cancer cell lines. In these models, MAP3K7 stimulates nemo-like kinase activity and inhibits the interaction of the ß-catenin and T cell factor-lymphoid enhancer factor nuclear factor transcriptional complex with deoxynucleotide nucleic acid (29–31). Actually aberrant accumulation of ß-catenin protein due to mutations of either the ß-catenin or adenomatous polyposis coli genes plays an essential role in the development of colorectal carcinoma (32). In the present work, Gln supplementation up-regulated MAP3K7 expression, and this effect may be involved in the modulation of HCT-8 extrinsic apoptosis by Gln. Moreover we observed that Gln down-regulated ß-catenin-interacting protein 1 (ICAT) expression. ICAT negatively regulates Wnt signaling via ß-catenin and T cell factor interaction inhibition (33). Because ICAT is overexpressed in almost half of colorectal carcinomas (33), nutritional modulation of ICAT could be an interesting approach to prevent the activation of inflammation leading to metaplasia and finally to cancer.
Furthermore we found that Gln down-regulated the expression of the COMMD (copper metabolism gene MURR1 domain) proteins 2 and 6. These proteins belong to the recently discovered COMMD protein family. COMMD proteins are extensively conserved in multicellular eukaryotic organisms and establish multimeric complexes involved in NF-
B transcriptional inhibition (34, 35). In physiological conditions, NF-
B is sequestered in the cytoplasm through an interaction with a family of inhibitory proteins, the inhibitor of nuclear factor
B (I
B). I
B proteins are phosphorylated by the I
B kinase (IKK) complex. After ubiquitinylation, I
B proteins are rapidly degraded by the proteasome, and this finally allows nuclear translocation and activation of NF-
B (36). NF-
B stimulates cell proliferation and limits PCD in different cell types, including rat IE6 cells (37, 38). Several studies have demonstrated that MAP3K7 activates IKK following TGF-ß1 treatment in murine hepatocytes (39) or TNF-
treatment in HeLa cells (40). Thus, Gln appears to positively modulate the antiapoptotic effects of NF-
B both by inducing the MAP3K7/IKK pathway and by decreasing the expression of both COMMD 2 and 6 NF-
B inhibitors.
Stathmin, or oncoprotein 18, is a ubiquitous cytoplasmic protein implicated in the dynamic regulation of microtubules. Stathmin promotes microtubule depolymerization during interphase and late mitosis and is regulated by changes in phosphorylation levels during cell cycle progression (41). Accordingly stathmin phosphorylation inhibits the protein microtubule destabilizing activity (41). Stathmin expression is up-regulated in a wide variety of human cancers such as acute leukemia and breast and liver cancer (42). Recently stathmin has been found to be activated by the apoptosis signal-regulating kinase 1-p38 cascade in rat pheochromocytoma PC12 cells (43). Here we observed that stathmin expression was down-regulated in HCT-8 cells, suggesting that Gln supplementation potentially modulates microtubule stabilization under apoptotic conditions.
Autophagy consists in wrapping a part of the cytoplasm into a specific membrane and to its later digestion by lysosomal enzymes. Depending on the cellular context, autophagy can promote cell survival or induce cell death in response to endogenous and exogenous stress, such as apoptotic effectors. It is generally accepted that during these cell death conditions, lysosomal membrane permeabilization (LMP) induces cytotoxic effects and is related to activation of the mitochondrial cell death pathway (44). Actually the proapoptotic protein Bid can be cleaved by cathepsins or lysosomal proteases in HeLa cells and human breast cancer MCF-7 cells (45, 46). Consequently Bid seems to be implicated as a potential mediator connecting LMP and autophagy (PCD type II) to apoptosis (PCD type I) processes. In addition, after TNF-
induction, LMP requires the caspase-8-mediated pathway in mice hepatocytes (47). Interestingly in our model, the expression of a protein involved in autophagy, Atg5, was markedly down-regulated by 10 mM Gln, suggesting that Gln supplementation can negatively modulate not only PCD type 1 (apoptosis) but also PCD type 2 (autophagy-mediated cell death). Autophagy is notably controlled by an evolutionarily conserved protein family, the autophagy proteins (Atg) (48). Sixteen Atg proteins are involved in the autophagosome biogenesis. Autophagosome represents the initial vacuole that sequesters cytoplasmic material before its delivery to the lysosome, and the (Atg12-Atg5-Atg16)4 tetramer complex is required for autophagosome expansion and completion (48). Moreover previous studies demonstrated the involvement of the Atg5 protein in autophagic cell death (49, 50). Accordingly the interaction between Atg5 and FADD (Fas-associated protein with death domain) has been shown to play a crucial role in interferon-
-induced cell death (51). A recent study has demonstrated that Atg5 constitutes a substrate for calpains 1 and 2 in several cell types (52). Actually the truncated form of Atg5 (relative molecular mass of 24,000 Da) tightly interacts with Bcl-xL, leading to antiapoptotic protein inactivation (49, 52). Thus, we demonstrate for the first time that Atg5 protein expression and consequently autophagic cell death mechanisms can be modulated by Gln supplementation. These data provide crucial information to understand the regulatory pathways of this recently discovered proapoptotic protein.
Altogether our results provide new interesting leads to explain the apoptosis suppressive capacities of Gln. The differentially expressed proteins described above are tightly implicated in all of the apoptotic processes including the extrinsic (MAP3K7 plus downstream effectors) and intrinsic apoptosis pathway (Aven), autophagy (Atg5), and cytoskeleton regulation (stathmin). Based on these results and a bibliographic analysis, the Gln-modulated protein data described above can be integrated to provide a global schema of the intestinal interactome under apoptotic conditions (Fig. 5) depicting the relevant protein interactions and the subcellular pathways involved that ultimately contribute to the cytoprotective effects of Gln. Finally our work introduces new ways of investigation for further research involving the antiapoptotic mechanisms of Gln in intestinal cells and may lead to the discovery of new biomarkers for the understanding of inflammation as well as cancer initiation and progression.
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| FOOTNOTES |
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Published, MCP Papers in Press, June 2, 2007, DOI 10.1074/mcp.M600428-MCP200
1 The abbreviations used are: TNF, tumor necrosis factor; 2-D, two-dimensional; I
B, inhibitor of nuclear factor
B; LMP, lysosomal membrane permeabilization; NF-
B, nuclear factor
B; PCD, programmed cell death; TGF-ß, transforming growth factor-ß; COMMD, copper metabolism gene MURR1 domain; ICAT, ß-catenin-interacting protein 1; IKK, I
B kinase; MAP3K7, mitogen-activated protein kinase kinase kinase 7. ![]()
* This work was supported in part by the Proteomic Platform of the European Institute for Peptide Research (IFRMP23) and the "Conseil Régional de Haute Normandie." The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ![]()
S The on-line version of this article (available at http://www.mcponline.org) contains supplemental material. ![]()
Supported in part by fellowships from "La Ligue Nationale Contre le Cancer" and the "Société Francophone de Nutrition Entérale et Parentérale." ![]()
** To whom correspondence should be addressed. Tel.: 33-2-35-14-84-58; Fax: 33-2-35-14-82-26; E-mail: s_thebault{at}hotmail.com
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