|
Advertisement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular & Cellular Proteomics 7:2293-2310, 2008.
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ABSTRACT |
|---|
|
|
|---|
-aminobutyric acid subtype A receptors (GABAARs) are applied frequently in obstetric and pediatric medicine. We demonstrated that a 1-day treatment of infant mice at postnatal day 6 (P6) with the NMDAR antagonist dizocilpine or the GABAAR agonist phenobarbital not only has acute but also long term effects on the cerebral cortex. Changes of the cerebral cortex proteome 1 day (P7), 1 week (P14), and 4 weeks (P35) following treatment at P6 suggest that a suppression of synaptic neurotransmission during brain development dysregulates proteins associated with apoptosis, oxidative stress, inflammation, cell proliferation, and neuronal circuit formation. These effects appear to be age-dependent as most protein changes did not occur in mice subjected to such pharmacological treatment in adulthood. Previously performed histological evaluations of the brains revealed widespread apoptosis and decreased cell proliferation following such a drug treatment in infancy and are thus consistent with brain protein changes reported in this study. Our results point toward several pathways modulated by a reduction of neuronal excitability that might interfere with critical developmental events and thus affirm concerns about the impact of NMDAR- and/or GABAAR-modulating drugs on human brain development.
Widespread apoptotic neuronal cell death occurs in immature rodent brains following treatment with N-methyl-D-aspartate receptor (NMDAR)1 antagonists and/or
-aminobutyric acid subtype A receptor (GABAAR) agonists during the brain growth spurt period. This mechanism may partly account for the neurologic morbidity of humans exposed to such substances during pre- and postnatal brain development (3–6). In humans, decreased gray matter volumes can be observed in adults following prenatal exposure to antiepileptic drugs (7). Developmental neurotoxicity of NMDAR antagonists and/or GABAAR agonists is associated with activation of apoptotic pathways and their effector caspases, oxidative stress, down-regulation of neurotrophins, and thereby depletion of neurotrophin-associated signaling in rodents (8–13). Whether and to what extent other mechanisms may be affected by changes in neuronal excitability and contribute to subsequent neurocognitive morbidity are not clear.
The aim of our present study was to investigate acute and long term changes in the brain proteome following NMDAR antagonist or GABAAR agonist exposure in infancy and thereby to gain insight into modulated developmental events as well as identify proteins potentially involved in the pathomechanism of observed neurological deficits or in reparative processes. Our results point toward a number of phenomena whose dysregulation can influence normal development, give rise to neurologic and neurocognitive deficits, and thus contribute to unfavorable outcomes of infants exposed to drugs or toxins that decrease neuronal excitation.
| MATERIALS AND METHODS |
|---|
|
|
|---|
For RT-PCR and Western blotting, P6 Wistar rat pups (n = 4–6; BgVV, Berlin, Germany) were subjected to intraperitoneal injections of dizocilpine, phenobarbital, or saline as described above and sacrificed 6, 12, and 24 h after initiation of treatment. Animals were decapitated, and the retrosplenial cortex was dissected, snap frozen in liquid nitrogen, and stored at –80 °C.
Protein Extraction Procedure—
Total protein extracts were prepared from cingulate, retrosplenial, frontal, and parietal cortices from the left hemisphere by an extraction procedure described previously (14, 15) and stored at –80 °C. Protein concentrations were determined using the Bio-Rad Detergent Compatible Protein Assay according to the protocol supplied by the manufacturer.
Two-dimensional Gel Electrophoresis—
Brain proteins were separated by large gel 2-DE as described previously (14–16). The gel format was 40 cm (IEF, ampholyte technique) x 30 cm (SDS-PAGE) x 0.75 mm (thickness). For IEF,
120 µg of protein extract of each sample and a carrier ampholyte mixture (pH 3–10) were applied to the anodic end of a tube gel, and gels were run for 1 h at 100 V, 1 h at 300 V, 23 h at 1000 V, 30 min at 1500 V, and finally 10 min at 2000 V. Proteins were visualized in SDS-PAGE gels by high sensitivity silver staining as described previously (17).
Initially 2-DE gels were evaluated visually by a trained observer on a light box (Biotec-Fischer, Reiskirchen, Germany). Spot changes were considered with respect to presence/absence, quantitative variation, and altered mobility. Mobility variants are spots that "move" to a different position in the 2-DE gel indicating a shift of isoelectric point and/or molecular weight. Only quantitative changes
7% were considered. Protein spots found to be reproducibly altered in at least six of eight (P14, phenobarbital) or seven of 10 or 11 (all other experiments) protein patterns of mice subjected to pharmacologic treatment when compared with those of control animals were further evaluated with ProteomweaverTM imaging software version 4.0.0.5 (Definiens, Munich, Germany). Following automatic spot detection and gel normalization, spot matching between all gels was monitored and edited where appropriate. Through automatic normalization spot intensities were adjusted in such a way that they become comparable between different gels. The relative intensity of individual spots in 2-DE gels of treated mice and controls was quantified through densitometric measurements in 16-bit gray scale images. Using Student's t test, significant differences between sample pairs were determined (p < 0.05). Protein isospots within discrete spot complexes, arrangements of several isospots in a dense cluster in 2-DE patterns that showed the same change upon pharmacological treatment, are referred to by one spot number.
Protein Identification—
For protein identification by MS,
800 µg of protein extract was separated on 1.5-mm-diameter IEF gels (40-cm length) and 1.0-mm-thick SDS-PAGE gels (40 cm x 30 cm x 1.0 mm) using the same running conditions as applied for the analytical gels prepared for relative protein expression analysis. Resulting 2-DE gels were stained by an MS-compatible silver staining protocol (18). Protein spots of interest, easily identified in MS and silver-stained gels, were excised from 2-DE gels and subjected to in-gel trypsin digestion. Tryptic fragments were analyzed by nanoflow HPLC (Dionex/LC Packings, Amsterdam, Netherlands)/ESI-MS and -MS/MS on an LCQ Deca XP ion trap instrument (Thermo Finnigan, Waltham, MA). Nanoflow HPLC was directly coupled to ESI-MS analysis. Protein spot eluates of 15 µl were loaded onto a PepMap100 C18 precolumn (5 µm, 100 Å, 300-µm inner diameter x 5 mm; Dionex/LC Packings) using 0.1% (v/v) trifluoroacetic acid at a flow rate of 20 µl/min. Peptides were separated onto a PepMap100 C18 100 column (3 µm, 100 Å, 75-µm-inner diameter x 15 cm; Dionex/LC Packings). The elution gradient was created by mixing 0.1% (v/v) formic acid in water (solvent A) and 0.1% (v/v) formic acid in acetonitrile (solvent B) and run at a flow rate of 200 nl/min. The gradient was started at 5% (v/v) solvent B and increased linearly up to 50% (v/v) solvent B after 40 min. ESI-MS data acquisition was performed throughout the LC run. Three scan events, (i) full scan, (ii) zoom scan of most intense ion in full scan, and (iii) MS/MS scan of the most intense ion in full scan, were applied sequentially. No MS/MS scan on single charged ions was performed. Raw data were extracted by the TurboSEQUEST algorithm, and trypsin autolytic fragments and known keratin peptides were subsequently filtered. All DTA files generated by BioWorks version 3.2 (Thermo Scientific, Waltham, MA) were merged and converted to MASCOT generic format files. Mass spectra were analyzed using our MASCOT in-house license with automatic searches in NCBInr (National Center for Biotechnology Information, Bethesda, MD) database version 20061206. The MS/MS ion search was performed with the following set of parameters: (i) taxonomy according to the origin of the sample, Mus musculus for GABAAR experiments (107,853 protein entries were searched in that database) and Mus for NMDAR experiments (109,401 protein entries were searched in that database); (ii) proteolytic enzyme, trypsin; (iii) maximum number of accepted missed cleavages, 1; (iv) mass value, monoisotopic; (v) peptide mass tolerance, 0.8 Da; (vi) fragment mass tolerance, 0.8 Da; and (vii) variable modifications, oxidation of methionine and acrylamide adducts (propionamide) on cysteine. Criteria for positive identification of proteins with MS were set according to the scoring algorithm delineated in MASCOT (version 2.1.0, Matrix Science, London, UK) with individual ion score cutoff threshold corresponding to p < 0.05 (19). The ion score cutoff value was calculated through MASCOT for each individual peptide search because this value depends both on the size of the experimental data and that of the database. Furthermore the molecular weight and pI of each protein determined by database search were compared with the range observed in the 2-DE patterns to increase the confidence of an MS/MS ion search result. Information on molecular weight and pI was also consulted when peptides matched to multiple members of a protein family. If this did not allow an unambiguous identification of a protein spot, additional digests and MALDI-MS were performed.
Mass spectra from peptide mixtures were generated using a Bruker Reflex IV MALDI-TOF mass spectrometer (Bruker Daltonik GmbH, Bremen, Germany) operated in reflector mode. Signals corresponding to m/z ranging from 0 to 3500 were monitored. For data processing the XMASS/NT 5.1.16 software package (Bruker Daltonik GmbH) was used. Internal calibration was performed with mass peaks 842,509 [M + H]+ and 2,211,104 [M + H]+, which were derived from autoproteolytic trypsin digestion. Peak picking was performed automatically, utilizing the following settings: mass range, 800–3500 Da; maximal peaks per sample, 200; SNAP algorithm; and peak sensitivity, at least 3. Masses from an exclusion list, containing known background peaks and trypsin-specific autoproteolytic peptide masses, were automatically deleted from the generated mass list. For database searches these mass lists were searched against the NCBInr protein databases using MASCOT Daemon 2.1.0. A maximum of one missed cleavage was allowed. Peptide mass tolerance was set to 100 ppm, and methionine oxidation and acrylamide-derived cysteine alkylation (cysteinyl-S-propionamide) were considered as possible modifications. Searches were restricted taxonomically to Mus/Mus musculus corresponding to the source of the sample. Proteins were evaluated by considering the MASCOT molecular weight search (MOWSE) score (p value <0.05), the number of matched peptides, and the percent coverage of protein sequence. If MALDI-MS did not allow for an exact identification of a protein spot, the spot was excluded from this study and is thus not reported.
Semiquantitative RT-PCR—
Retrosplenial cortices were rapidly collected, pooled, snap frozen in liquid nitrogen, and stored at –80 °C. Total cellular RNA was isolated by acidic phenol/chloroform extraction. Prior to reverse transcription, possible DNA contamination was checked by running RNA samples on a 1% agarose gel subsequently developed with ethidium bromide. 500 ng of RNA was reverse transcribed at 42 °C with 200 units of Moloney murine leukemia virus reverse transcriptase and 2 µM oligo(dT)15 primer (Promega, Madison, WI) in 35 µl of reaction mixture. Primer sequences designed for PCR amplification of collapsin response mediator proteins 2 and 4 (Crmp2 and Crmp4) segments and PCR cycling conditions are available from the authors on request. Amplified cDNA was subjected to 5% polyacrylamide gel electrophoresis, subsequent silver staining, and densitometric analysis with the image analysis program BioDocAnalyze (Whatman Biometra, Göttingen, Germany).
Western Blotting—
Western blots of one-dimensional SDS-PAGE and 2-DE gels were performed to identify isospots of CRMP2 and phosphoprotein enriched in astrocytes 15 (PEA15) and to analyze changes of their abundance throughout brain development and in adulthood. For Western blotting, protein samples from murine cerebral cortices at ages P7, P14, P35, and P56 were prepared as described above. For blots of one-dimensional SDS-PAGE, protein extracts at equal amounts (
100 µg) and a molecular weight marker (Rainbow marker, Amersham Biosciences) were dissolved in Laemmli sample loading buffer (pH 6.8, 50% glycerol, 2% SDS, 5% β-mercaptoethanol, 62.5 mM Tris, 0.1 mg/ml bromphenol blue), separated by 10% SDS-PAGE, and electrotransferred to PVDF (Millipore, Billerica, MA) using a discontinuous semidry blot system (current, 0.8 mA/cm2 of gel area). For blots of 2-DE gels, small 2-DE gels (16 x 20 cm) were prepared as described above. Membranes were stained with Ponceau red, and blotted SDS-PAGE gels were silver-stained to ensure that equal amounts of protein were transferred to the PVDF membrane.
Blotting membranes were rinsed with Tween-containing Tris-buffered saline (TBST; 10 mM Tris, 133 mM NaCl, 0,1% Tween 20, pH 7.4) and treated with blocking solution (10% nonfat dry milk in TBST) overnight at 4 °C to prevent nonspecific antibody binding. Membranes were incubated with rabbit anti-CRMP2 polyclonal antibody (Chemicon, Temecula, CA) at a dilution of 1:500, rabbit anti-CRMP4 polyclonal antibody (Chemicon) at a dilution of 1:1000, or rabbit anti-PEA15 polyclonal antibody (Cell Signaling Technology, Beverly, MA) at a dilution of 1:1000, respectively. For nitro blue tetrazolium/5-bromo-4-chloro-3-indolyl phosphate disodium salt staining, a polyclonal goat anti-rabbit antibody (SAB-301, Stressgen, Ann Arbor, MI) conjugated to alkaline phosphatase at a dilution of 1:2000 in blocking solution was used as the secondary antibody. A control reaction using only the secondary antibody was negative. 400 µl of 5-bromo-4-chloro-3-indolyl phosphate disodium salt (0.4 mM) in DMSO and 0.4 mM nitro blue tetrazolium were added to 100 mM Tris base, 100 mM NaCl, and 5 mM MgCl2. For luminescence staining, a horseradish peroxidase-conjugated donkey anti-rabbit antibody in 10% (w/v) nonfat dry milk in TBST was utilized that was provided with the luminescence detection kit (ECL detection reagents, Amersham Biosciences). Antibody incubations of 1.5 h were preceded and followed by three washes in washing buffer (20 mM Tris base, 0.9% (w/v) NaCl, 0.1% (w/v) Tween 20) of 5 min each. Luminescence staining was carried out according to the manufacturer's protocol, and serial exposures were made on autoradiographic film (X-Omat UV Plus Film, Eastman Kodak Co.). Densitometric analysis of the blots was performed with the image analysis program BioDocAnalyze (Whatman Biometra). For stripping, membranes were incubated with stripping buffer (100 mM β-mercaptoethanol, 2% SDS, 62.5 mM Tris-HCl, pH 6.7) at 50 °C for 30 min, then washed, blocked, and reprobed overnight at 4 °C with mouse anti-β-actin monoclonal antibody (1:10,000; Sigma).
| RESULTS |
|---|
|
|
|---|
Proteome Changes of the Cerebral Cortex throughout Postnatal Brain Development
To analyze physiological proteome changes of the cerebral cortex that are associated with normal postnatal brain development, total protein extracts of left hemispheric cerebral cortices from control mice were separated at ages P7, P14, and P35 and in adulthood at P56 according to their pI in the first dimension and their molecular weight in the second dimension. After silver staining of 2-DE gels,
6000 discrete spots per sample were detected (Fig. 1).
|
Several isoproteins could be visualized at P7 on 2-DE gels but diminished or disappeared in the course of development (early expression group), whereas others could not be visualized or were only present in small amounts at P7 but appeared at later ages (late expression group), appeared only at a specific age (transient expression group), or were largely unchanged at all ages evaluated (stable expression group; Fig. 2A). This classification that holds true for one isoprotein is not necessarily applicable for all spots assigned to one protein (isoproteins). CRMP2, for example, is a protein generally perceived to be a member of the early expression group, but it demonstrated a differential regulation when investigated by 2-DE (Fig. 2B). We detected CRMP2 isospots through Western blot analysis of 2-DE gels followed by mass spectrometry (Figs. 2 and 3 and see Table III). Western blotting with a CRMP2 antibody revealed 27 isospots in the cerebral cortex 2-DE protein pattern at P7. The abundance of most isospots was strongly reduced in older mice; moreover 10 and 13 isospots could not be visualized anymore at P14 and P35, respectively. Unexpectedly four and five isospots that could not be detected at P7 appeared at P14 and P35, respectively. The latter finding highlights that although the abundance of CRMP2 generally decreased with age (early expression group) several isoproteins could be assigned to the late (or stable) expression group. Some proteins also showed an increase in the number of isospots (isoproteins) detectable on a 2-DE gel throughout development. For example, two isospots of PEA15 were detectable at P7 at low levels through Western blot analysis of 2-DE gels, and by P14 and P35, the abundance of these isospots had increased, and a further isospot had appeared (Fig. 2C). PEA15 isospots were identified through mass spectrometry (Fig. 4 and see Table IV).
|
|
|
|
|
Through a comparison of brain proteomes in 2-DE protein patterns, we detected reproducible qualitative and quantitative differences in 28, 14, and 18 protein spots of mice treated with dizocilpine and in 24, 19, and four protein spots of mice treated with phenobarbital in infancy as compared with untreated littermates at P7, P14, and P35, respectively (Student's t test, p < 0.05; Fig. 1). Changes in spot intensities usually varied in the range of 10–150% increase or decrease, and in six cases the electrophoretic mobility was altered. Mass spectrometry facilitated the identification of 25, 12, and 16 (dizocilpine) and 19, 18, and four (phenobarbital) discrete proteins at P7, P14, and P35, respectively (Tables I and II). Isoproteins dysregulated upon drug treatment could be assigned to the early, late, stable, or transient expression group (Tables I and II). Several proteins were altered both following treatment with dizocilpine and after an exposure to phenobarbital: glyoxalase 1 (GLO1), peroxiredoxin 1 (PRDX1), cell division cycle 10 homolog (CDC10), creatine kinase, brain (CKB), prohibitin (PHB), translational endoplasmic reticulum ATPase, valosin-containing protein (VCP), CRMP1, microtubule-associated protein 1B (MAP1B), apolipoprotein A-I precursor (APOA1), and myosin regulatory light chain-like (MRLCL). However, we did in several cases detect a different regulation of these proteins with regard to timing, isoprotein, and quality/quantity of regulation depending on the drug applied (Tables I and II).
|
|
, CDC10; Table II). Such a differential regulation of a protein phenotype may contribute to fine tuning and adjustment of a pathway. By our approach, we typically identified one or a few members of a distinct pathway that may be engaged in the pathogenesis of dizocilpine- or phenobarbital-mediated brain damage or reparative processes. This approach does not facilitate the detection of all members of a particular pathway; this is partly because of an underrepresentation of low abundance, hydrophobic, very acidic or basic, and very low or high molecular mass proteins in 2-DE gels.
Proteins altered in the cerebral cortex in response to drug treatment of infant mice were associated with apoptosis, oxidative stress, inflammation, cell maintenance and growth, synaptic function/vesicular transport, and neuronal circuit formation. Brain isoproteins altered acutely following drug exposure in infancy were not differentially regulated in the cerebral cortices of mice subjected to dizocilpine or phenobarbital treatment in adulthood (P56) with the exception of proteasome
5 subunit (PSMA3; up-regulated upon dizocilpine), PHB (mobility variant upon dizocilpine and phenobarbital treatment, respectively), and heterogeneous nuclear ribonucleoprotein A3 (HNRNPA3; down-regulated upon dizocilpine; data not shown). Acute proteome changes, indicating that NMDAR blockade and GABAAR activation lead to a disruption of brain function/morphology in infancy, are in line with our histological results reported previously (3, 4).2
Apoptosis and Oxidative Stress—
We identified acute and long term changes in brain proteins that can be linked to NMDAR antagonist- or GABAAR agonist-induced increased rates of apoptosis, increased production of reactive oxygen species in the developing rodent brain, and inflammation (Fig. 1 and Tables I and II). An acute and subacute dysregulation of free radical defenses such as peroxiredoxins 1 and 2 following dizocilpine or phenobarbital treatment, tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein (14-3-3) polypeptides in response to an administration of phenobarbital, and DJ1 protein following dizocilpine application was observed. Dizocilpine also induced a subacute dysregulation of carbonic anhydrase 2 and 4 weeks post-treatment of
-crystallin, quinine oxidoreductase (CRYZ). Glia cell-associated proteins were dysregulated acutely and subacutely both after treatment with dizocilpine and with phenobarbital. In adult mice, no significant alteration of these isoproteins was detected.
Cell Maintenance/Proliferation and Neuronal Circuit Formation—
In response to the neuronal excitability-reducing agents dizocilpine and phenobarbital, we detected acute and long term dysregulation of several proteins involved in cell maintenance and proliferation as well as in neuronal migration and arborization (Fig. 1 and Tables I and II). Also quantitative and qualitative differences of RAB and RHO GDP dissociation inhibitor 1 (RABGDI1 and RHOGDI1) isoproteins were detected in response to dizocilpine as well as dysregulations of downstream effectors such as CRMP isoforms 1, 2, and 4; profilin 2; and PHB following treatment with dizocilpine or phenobarbital (Fig. 1 and Tables I and II). The increase of total CRMP2 and CRMP4 protein levels following drug treatment was also detected in Western blots of one-dimensional SDS-PAGE gels (Fig. 5). To examine whether the changes of CRMP isoforms seen in 2-DE gels were due to changes already at the mRNA level, we applied RT-PCR analysis of samples from retrosplenial cortex. In accordance with the changes seen on 2-DE gels, we detected a progressive increase of CRMP2 and CRMP4 mRNA levels 6 and 12 h following the initiation of drug treatment; 24 h after treatment initiation CRMP2 and -4 mRNA levels had not returned to normal levels (Fig. 5). The effects of the NMDAR antagonist dizocilpine and the GABAAR agonist phenobarbital on brain proteins appear to be age-dependent as most (see above) did not occur in mice exposed to these drugs at an age beyond the period of rapid brain growth.
|
| DISCUSSION |
|---|
|
|
|---|
Proteome Changes of the Cerebral Cortex throughout Postnatal Brain Development
Proteome analysis of the murine cerebral cortex at three different stages during postnatal brain development (P7, P14, and P35) and in adult mice (P56) disclosed physiologic changes of cerebral cortex proteome phenotype throughout brain maturation and served as a basis for our study (Figs. 1 and 2). The rodent brain is especially vulnerable toward otherwise harmless influences during the first 3 postnatal weeks that coincide with the peak of the brain growth spurt, i.e. a time of extensive synaptogenesis, glial proliferation, myelination, brain growth, and reorganization events (21). In humans this period starts at about midpregnancy and extends well into the 3rd postnatal year (21, 22). Protein patterns, as visualized by 2-DE and silver staining, increased in complexity from the early postnatal age P7 to adult age of P56 in the brains of control mice (Fig. 1). As reported previously by our group, 30–40% of protein spots in 2-DE gels of whole brain samples change between embryonic day 16 and P7 as well as between P7 and P56, and the number of up-regulated protein isoforms are balanced against the number of down-regulated proteins during postnatal brain development (23). Protein regulation levels may be even higher than can be shown by quantitative measurements of silver-stained gels. Such measurements, even when performed under the best conditions, are not sensitive enough to recognize the smallest changes between developmental stages. Yet even small changes in protein phenotypes may be of functional significance for physiological development.
The observed protein changes throughout brain development can be assigned to one of four groups: (i) early expression group: proteins that can be visualized during early brain development but diminish or disappear in the course of development, (ii) late expression group: proteins that cannot be visualized or are only present at small amounts during early brain development and appear later at high concentrations, (iii) transient expression group: proteins that appear only at a specific age, and (iv) stable expression group: proteins that can be detected largely unchanged at all ages evaluated (Fig. 2A). Of course, a classification of proteins into one of these groups may vary as further ages are introduced into the analysis, i.e. a protein assumed to be present at all ages may not be synthesized at earlier or much later ages. Also various isospots (isoproteins) of one protein may fall into different groups as demonstrated for CRMP2. A high abundance of 27 CRMP2 isospots at P7 on 2-DE gels and a massive reduction by P14 and P35 of most of them was observed (early expression group); however, seven isospots occurred only at P14 or P35 (late expression group; Fig. 2B). Moreover other proteins such as PEA15 showed an increase in the number of isospots (isoproteins) detectable on a 2-DE gel throughout development (Fig. 2C). Isoproteins of CRMP2 and PEA15 were identified through MS (Figs. 3 and 4 and Tables III and IV). The change of phenotype (concentration and/or isospot number) throughout development is often in line with the associated function of the protein. (i) CRMP2 has been implicated in cell polarity and axonal guidance and outgrowth (24), thus contributing to neuronal connectivity under physiological conditions especially in early phases of brain development. The decrease with age is consistent with the reduction of neuronal migration and axonal growth and guidance following the growth spurt phase. (ii) PEA15 has been implicated in the modulation of signaling pathways that control apoptosis and cell proliferation (25) and has been associated with an inhibition of cell migration (26). For PEA15, an increase of its abundance after the period of rapid brain growth has to be anticipated.
These dynamics of protein levels throughout brain development and in adulthood need to be considered when examining differences in brain proteomes following pharmacologic treatment at various ages. The detection of a protein change at a certain age upon drug treatment through proteome techniques applied in this study requires that a specific isoprotein is present and that the isoprotein level is high enough for detection in the physiologic or pathologic state. The finding that protein changes occur at a specific time following drug treatment, i.e. acutely (P7), subacutely (P14), or as a long term effect (P35), but not at all time points analyzed may reflect that (i) a protein change occurs truly only at a specific time, (ii) an (iso)protein does not exist yet or not anymore at a specific age, (iii) an (iso)protein quantity is below detection level because of a reduced gene expression, reduced protein synthesis, change in co-/post-translational modification, and/or increased turnover at specific ages, or (iv) the dynamics of protein changes may differ between ages and thus be present but not significant at certain ages (see also below). Protein isoforms may possess different functions at various developmental periods and/or be part of a different pathway at various ages.
Acute and Long Term Cerebral Cortex Proteome Changes
Through a comparison of brain proteomes in 2-DE protein patterns of the cerebral cortex, we detected reproducible qualitative and quantitative differences in 25, 12, and 16 proteins (28, 14, and 18 protein spots) of mice treated with the NMDAR antagonist dizocilpine and in 19, 18, and four proteins (24, 19, and four protein spots) of mice treated with the GABAAR agonist phenobarbital in infancy as compared with untreated littermates at P7, P14, and P35, respectively (Fig. 1A and Tables I and II). Ten proteins were altered both following treatment with dizocilpine and after an exposure to phenobarbital (GLO1, PRDX1, CDC10, CKB, PHB, VCP, CRMP1, MAP1B, APOA1, and MRCLC). The classification of individual altered isoproteins in developmental subgroups is indicated in Tables I and II.
Protein dysregulation occurred primarily in the acute phase of pharmacological treatment and resolved within 1 (P14) to 4 weeks (P35). Thereafter alterations of five (GLO1, RHOGDI1, MAP1B, PHB, and MRLCL) and two (CDC10 and translationally controlled tumor protein (TPT1)) proteins persisted for at least 4 weeks following treatment with NMDAR antagonist dizocilpine or phenobarbital, respectively (Tables I and II). Most of these isoproteins can be assigned to the stable expression group. One week following pharmacological treatment we observed very dynamic alterations in protein synthesis with some protein spots still or already altered in some mice, whereas others showed no alteration in protein abundance, a finding that in part explains the lower number of reproducibly altered proteins at P14. Surprisingly late changes of 11 (CRYZ, chaperonin subunit 6a (CCT6), VCP, NADH dehydrogenase (ubiquinone) 1
subcomplex 9 (NDUFA9), RABGDI1, fascin (FSCN1), profilin 2 (PFN2), actin-related protein 2/3 complex subunit 2 (ARPC2), smooth muscle and nonmuscle myosin light chain alkali 6 (MYL6), 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase (ATIC), and complement component 1,q subcomponent-binding protein (C1QBP) and two (VCP and PFN2) previously unaltered or undetectable proteins appeared 4 weeks after treatment with dizocilpine or phenobarbital, respectively (Tables I and II). This may have several reasons as discussed above. In fact, although most isoproteins can be assigned to the stable expression group (showing only little changes throughout development), three proteins could be visualized only at certain ages (transient expression group; ARPC2) or showed increased concentration with age (late expression group; CRYZ and MYL6). Although acute protein alterations can be explained as direct effects of pharmacologic treatment on cell metabolism (e.g. apoptosis), protein changes that persist or even occur later in development indicate long term disruption of brain function/morphology and/or ongoing reorganization processes. A reduction of neuronal excitability through blockage of NMDAR or activation of GABAAR in the immature brain causes acute functional and morphological changes of the developing brain (1–4). In addition, acute functional and morphological changes may induce further functional and morphological changes in the period of rapid brain growth and thereby result in an irreversibly damaged adult brain.
Acute and long term modifications of cerebral cortex proteins detected in this study indicate that a brief alteration of NMDAR- or GABAAR-mediated neurotransmission in infant rodents not only results acutely in an increased rate of apoptosis, oxidative stress, and inflammation in their brains but may also elicit long term alterations in cell maintenance/proliferation and neuronal circuit formation (Table I). Most alterations observed in infant mice did not occur in adult mice exposed to dizocilpine or phenobarbital and thus appear to be effects specific for infant cerebral cortex development.
Apoptosis, Oxidative Stress, and Inflammation—
We identified acute and long term changes in brain proteins that can be linked to NMDAR antagonist dizocilpine- and GABAAR agonist phenobarbital-induced increased rates of apoptosis and oxidative stress levels in the developing cerebral cortex (Fig. 1A and Tables I and II). Moreover several glia-associated proteins such as glial fibrillary acidic protein, astrocyte (GFAP) and glia maturation factor β (GMFB) were dysregulated as potential indicators of inflammation (Tables I and II). Consistent with the results of the proteome analysis, we demonstrated previously that exposure of infant rats to dizocilpine or phenobarbital significantly increases the rate of apoptotic cell death in the cortex (3–5). This vulnerability is significantly increased in neonatal rodents and subsides in the course of the growth spurt period by P14 in rodents (3–5). Drug-induced apoptotic cell death may be associated with oxidative stress as suggested by observed protein changes. The dysregulation of free radical defenses/scavengers PRDX1, PRDX2, DJ1, carbonic anhydrase 2 (CA2), and CRYZ likely reflects a physiologic activation of endogenous antioxidant defense mechanisms to prevent oxidative damage or a consumption of these proteins as a result of overwhelming oxidative stress. The role of peroxiredoxins in coping with oxidative stress has long been established (27, 28). Similarly carbonic anhydrase and crystallin isoforms have been associated with protection against stress (29, 30). DJ1 is a primarily cytoplasmic protein ubiquitously and abundantly expressed in mammalian tissues including the brain; in the brain it exists abundantly in reactive astrocytes, other glia cells, and in neurons (31). Loss of function by gene mutations has been linked to familial Parkinson disease (32), and multifunctional DJ1 has been implicated to be both a sensor for oxidative stress and a scavenger of reactive oxygen species (31).
Cell Proliferation—
Acute and long term changes of proteins were detected that indicate a modulation of cell maintenance and proliferation (Tables I and II and Fig. 1A). Results from our laboratory indicate that both drugs markedly suppress cell proliferation within the cerebral cortex when administered to infant rats during the 2nd postnatal week of life,2 a phenomenon that within the cerebral cortex primarily affects gliogenesis. Activation of NMDAR has been reported to increase proliferation and differentiation of hippocampal neuronal progenitor cells in the developing brain (33) and to decrease the diameter of neurospheres in the embryonic rat brain (34). Glutamate has also been reported to enhance proliferation and neurogenesis in human neuronal progenitor cell cultures derived from the fetal cortex (35) and to act as a positive regulator of neurogenesis (36). Our findings are in line with these reports on the role of NMDAR, which is a stimulatory effect on cell proliferation, in the developing brain.
-Aminobutyric acid constitutes a developmental signal during stages of embryonic neurogenesis, progenitor proliferation, neuronal migration, and neurite outgrowth (37).
Neuronal Network Formation—
Neuronal network development depends not only on genetic determinants (38) but also on modulation of synaptic activity through exogenous factors (39–41). In our experimental model of drug-induced modulation of neuronal excitability, proteins that can play a role in neuronal migration and axonal arborization were dysregulated following drug exposure in infancy but not in adulthood (Tables I and II and Fig. 1). Growth cone guidance may be influenced by the acute and long term modulation of Rho family small GTPase regulators RABGDI1 and RHOGDI1; both proteins bind to the GDP form of Rho GTPases, slow the rate of GDP dissociation from Rho GTPases, and thereby decrease the activity of these proteins (42). GTP-bound Rho family GTPases modulate cytoskeletal morphology through a wide variety of effector molecules (42–45). Quantitative and qualitative differences of RABGDI1 and RHOGDI1 isoproteins were detected in response to dizocilpine as well as dysregulations of downstream effectors such as CRMP isoproteins following treatment with dizocilpine and phenobarbital. The function of CRMPs, proteins initially identified as mediators of semaphorin3A/collapsin-induced growth cone collapse, is crucial for axonal growth and branching, determination of axon-dendrite fate, establishment of neuronal polarity, and kinesin I-dependent transport of proteins to growth cones (24, 43, 44, 46). CRMP2 levels have been shown to be high at early stages of development and reduced massively following the period of rapid brain growth within the first postnatal weeks (46). Here we demonstrated a differential regulation of CRMP2 isoproteins through Western blot analysis of 2-DE gels.
The observed CRMP isoform dysregulation following dizocilpine- or phenobarbital-induced neurodegeneration may reflect neuronal regeneration or detrimental central nervous system damage through the formation of aberrant axons and/or a loss of neuronal polarity as demonstrated in the context of other models in vitro (46–48). NMDAR antagonists have been reported to affect branching of neuronal processes in embryonic rat hippocampal neurons, and a temporary block of N-methyl-D-aspartate and non-N-methyl-D-aspartate glutamate receptors in immature rats also disrupted the topographic refinement of thalamocortical connectivity and columnar organization, i.e. the topographic organization of synaptic connections (49, 50). Similarly agonists and antagonists of GABAAR have been associated with effects on neuronal migration and differentiation including neurite outgrowth (37, 51, 52).
Although acute brain protein alterations in response to NMDAR inhibition (dizocilpine) or GABAAR activation (phenobarbital) within the period of rapid brain growth most likely represent direct drug-induced effects on cell metabolism, sustained or newly evolved differences in brain protein phenotypes 4 weeks after drug exposure may constitute secondary changes such as irreversible morphological alterations (a possibly ongoing shift in normal developmental program) and/or reorganization events. In comparison with the adult brain, suppression of neuronal activity disturbs a vulnerable and developing system in which the cellular phenotypes, protein concentrations, protein compositions, and interactions change rapidly according to a predetermined developmental program. So far, little is known about the effects of antiepileptic and sedative drugs on dynamic processes in the developing brain. Our results demonstrate that comparative analysis of the brain proteome enables insight into the nature of developmental events that may be disrupted by drug-induced changes in neuronal activity and possibly also by other developmental insults. In the case of dizocilpine and phenobarbital exposure of infant rodents, impairment beyond that of acute apoptotic neurodegeneration became evident. These effects did not occur in mice at an age beyond the period of rapid brain growth. Our findings indicate that, in the developing brain, inhibition of NMDAR activity and activation of GABAAR activity may acutely cause oxidative stress, inhibit cell proliferation, and induce abnormal neuronal migration/arborization. Ongoing studies will explore functional and morphological aspects of these effects.
Conclusion
Our findings are highly relevant from a clinical perspective because compounds acting as NMDAR antagonists or GABAAR agonists are frequently applied as sedatives, tranquilizers, anticonvulsants, or anesthetics in obstetric/pediatric medicine, and the developing human brain may therefore be exposed to these agents when administered by medical professionals. Furthermore because of their pharmacological profile, these substances have high abuse potential, and drug-abusing pregnant women may therefore expose their fetuses to these drugs. Hence the experimental evidence we present here calls for caution with the use of NMDAR antagonists and GABAAR agonists in neonatal, pediatric, and obstetric medicine.
| ACKNOWLEDGMENTS |
|---|
| FOOTNOTES |
|---|
Published, MCP Papers in Press, June 27, 2008, DOI 10.1074/mcp.M800030-MCP200
1 The abbreviations used are: NMDAR, N-methyl-D-aspartate receptor; GABAAR,
-aminobutyric acid subtype A receptor; P, postnatal day; 2-DE, two-dimensional gel electrophoresis; CRMP, collapsin response mediator protein; PEA15, phosphoprotein enriched in astrocytes 15; TBST, Tween-containing Tris-buffered saline; GLO1, glyoxalase 1; PRDX, peroxiredoxin; CDC10, cell division cycle 10 homolog; CKB, creatine kinase, brain; PHB, prohibitin; VCP, valosin-containing protein; MAP1B, microtubule-associated protein 1B; APOA1, apolipoprotein A-I precursor; MRLCL, myosin regulatory light chain-like; HNRNPA3, heterogeneous nuclear ribonucleoprotein A3; GDI, GDP dissociation inhibitor; CA2, carbonic anhydrase 2; CRYZ,
crystallin, quinine oxidoreductase; EG, expression group; GFAP, glial fibrillary acidic protein, astrocyte; GMFB, glia maturation factor β; CCT6, chaperonin subunit 6a; NDUFA, NADH dehydrogenase (ubiquinone) 1
subcomplex; FSCN1, fascin; PFN2, profilin 2; ARPC2, actin-related protein 2/3 complex subunit 2; MYL6, smooth muscle and nonmuscle myosin light chain alkali 6; ATIC, 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; C1QBP, complement component 1,q subcomponent-binding protein; TPT1, translationally controlled tumor protein. ![]()
2 Stefovska, V. G., Uckermann, O., Czuczwar, M., Smitka, M., Czuczwar, P., Kis, J., Kaindl, A. M., Turski, L., Turski, W. A., and Ikonomidou, C. (2008) Sedative and anticonvulsant drugs suppress postnatal neurogenesis. Ann. Neurol. in press. ![]()
* This work was supported by the German Ministry for Education and Research (BMBF) within the National Genome Research Network (NGFN) program, by Sanitaetsrat Dr. Emil Alexander Huebner und Gemahlin-Stiftung, and by a Rahel Hirsch scholarship from the Charité-Universitätsmedizin Berlin. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 U.S.C. Section 1734 solely to indicate this fact. ![]()
This work is dedicated to the memory of Maik A. Wacker.
S The on-line version of this article (available at http://www.mcponline.org) contains supplemental material. ![]()
|| To whom correspondence should be addressed: Dept. of Pediatric Neurology, Charité-Universitätsmedizin Berlin, Campus Virchow-Klinikum, Augustenburger Platz 1, 13353 Berlin, Germany. Tel.: 49-30-450-566112; Fax: 49-30-450-566920; E-mail: angela.kaindl{at}charite.de
| REFERENCES |
|---|
|
|
|---|
-dependent mechanism.
Mol. Biol. Cell 17, 5141
–5152
.
J. Biol. Chem. 273, 6297
–6302
2-Chimaerin, cyclin-dependent kinase 5/p35, and its target collapsin response mediator protein-2 are essential components in semaphorin 3A-induced growth-cone collapse.
J. Neurosci. 24, 8994
–9004This article has been cited by other articles:
![]() |
J. Kocerha, M. A. Faghihi, M. A. Lopez-Toledano, J. Huang, A. J. Ramsey, M. G. Caron, N. Sales, D. Willoughby, J. Elmen, H. F. Hansen, et al. MicroRNA-219 modulates NMDA receptor-mediated neurobehavioral dysfunction PNAS, March 3, 2009; 106(9): 3507 - 3512. [Abstract] [Full Text] [PDF] |
||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| All ASBMB Journals | Journal of Biological Chemistry |
| Journal of Lipid Research | ASBMB Today |