|
|
||||||||
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Submitted on July 10, 2003
Physiology & Biophysics, Albert Einstain College of Medicine, Bronx, NY 10461
Corresponding Author: mrc{at}aecom.yu.edu
Protein footprinting provides detailed structural information on protein structure in solution by directly identifying accessible and hydroxyl radical-reactive side chain residues. Radiolytic generation of hydroxyl radicals using millisecond pulses of a synchrotron white beam results in the formation of stable side-chain oxidation products, which can be digested with proteases for mass spectrometry analysis. LC-coupled MS and tandem MS methods allow for the quantitation of the ratio of modified and unmodified peptides and identify the specific side-chain probes that are oxidized, respectively. The ability to monitor the changes in accessibility of multiple side-chain probes by monitoring increases or decreases in their oxidation rates as a function of ligand binding provides an efficient and powerful tool for analyzing protein structure and dynamics. In this study, we probe the detailed structural features of gelsolin in its inactive and Ca+2- activated state. Oxidation rate data for eighty-one peptides derived from the trypsin digestion of gelsolin are presented; sixty of these peptides were observed not to be oxidized and twenty-one had detectible oxidation rates. We also report the Ca+2-dependent changes in oxidation for all eighty-one peptides; fifty-nine remain unoxidized, while five increase their oxidation rate and two experience protections. Tandem mass spectrometry was used to identify the specific side chain probes responsible for the Ca-insensitive and Ca-dependent responses. These data are consistent with crystallographic data for the inactive form of gelsolin in terms of the surface accessibility of reactive residues within the protein. The results demonstrate that radiolytic protein footprinting can provide detailed structural information on the conformational dynamics of ligand induced structural changes and the data provide a detailed model for gelsolin activation.
Revised on September 8, 2003
Accepted on September 8, 2003
Structural analysis of gelsolin using synchrotron protein footprinting
![]()
CiteULike
Complore
Connotea
Del.icio.us
Digg
Reddit
Technorati What's this?
This article has been cited by other articles:
![]() |
Ashish, M. S. Paine, P. B. Perryman, L. Yang, H. L. Yin, and J. K. Krueger Global Structure Changes Associated with Ca2+ Activation of Full-length Human Plasma Gelsolin J. Biol. Chem., August 31, 2007; 282(35): 25884 - 25892. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. Xu, R. Liu, O. Zak, P. Aisen, and M. R. Chance Structural Allostery and Binding of the Transferrin{middle dot}Receptor Complex Mol. Cell. Proteomics, December 1, 2005; 4(12): 1959 - 1967. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Brenowitz, D. A. Erie, and M. R. Chance Catching RNA polymerase in the act of binding: Intermediates in transcription illuminated by synchrotron footprinting PNAS, March 29, 2005; 102(13): 4659 - 4660. [Full Text] [PDF] |
||||
![]() |
S. Gupta, W. F. Mangel, W. J. McGrath, J. L. Perek, D. W. Lee, K. Takamoto, and M. R. Chance DNA Binding Provides a Molecular Strap Activating the Adenovirus Proteinase Mol. Cell. Proteomics, October 1, 2004; 3(10): 950 - 959. [Abstract] [Full Text] [PDF] |
||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH |
| All ASBMB Journals | Journal of Biological Chemistry |
| Journal of Lipid Research | ASBMB Today |