Submitted on March 7, 2007
Revised on July 10, 2007
Accepted on July 20, 2007
A high content in lipid-modified peripheral proteins and integral receptor kinases features the Arabidopsis plasma membrane proteome
Anne Marmagne, Myriam Ferro, Thierry Meinnel, Christophe Bruley, Lauriane Kuhn, Jerôme Garin, Hélène Barbier-Brygoo, and Geneviève Ephritikhine
SDV/EDD, CNRS/Université Denis Diderot Paris7, Gif sur Yvette, Cedex 91198
Corresponding Author: ephritikhine{at}isv.cnrs-gif.fr
The proteomics of plasma membrane has brought to date only scarce and partial information on the actual protein repertoire. In this work, the plant plasma membrane proteome of Arabidopsis thaliana was investigated. A highly purified plasma membrane fraction was washed by NaCl and Na2CO3 salts and the insoluble fractions were further analyzed by nanoLC-MS/MS. With 446 proteins identified, we hereby describe the largest plasma membrane proteome diversity reported so far. Half of the proteins were predicted to display transmembrane domains and/or to be anchored to the membrane, validating a posteriori the pertinence of the approach. A fine analysis highlighted two main specific and novel features. First, the main functional category is represented by a majority of as yet unreported signaling proteins, including 11% receptor-like kinases. Second, 16% of the identified proteins is predicted to be lipid-modified, specifically involving double lipid linkage through N-terminal myristoylation, S-palmitoylation, C-terminal prenylation or GPI-anchors. Thus, our approach leads for the first time to the identification of a large number of peripheral proteins as part of the plasma membrane and allows the functionality of the plasma membrane in the cell context to be re considered.