Tutorial:

Interpretation of Shotgun Proteomic Data: The Protein Inference Problem

Alexey I. Nesvizhskii and Ruedi Aebersold
Mol Cell Proteomics 2005 4: 1419-1440. First Published on July 11, 2005; doi:10.1074/mcp.R500012-MCP200 [Abstract] [Full Text] [PDF]  

Reviews/Perspectives:

The Roles of Multiple Proteomic Platforms in a Pipeline for New Diagnostics

N. Leigh Anderson
Mol Cell Proteomics 2005 4: 1441-1444. First Published on July 14, 2005; doi:10.1074/mcp.I500001-MCP200 [Full Text] [PDF]  

Research:

Proteomic Analysis of Cellular Response to Osmotic Stress in Thick Ascending Limb of Henle’s Loop (TALH) Cells

Hassan Dihazi, Abdul R. Asif, Nitin K. Agarwal, Yuliana Doncheva, and Gerhard A. Müller
Mol Cell Proteomics 2005 4: 1445-1458. First Published on June 22, 2005; doi:10.1074/mcp.M400184-MCP200 [Abstract] [Full Text] [PDF]  

Characterization of Mouse Spleen Cells by Subtractive Proteomics

Francisco J. Dieguez-Acuna, Scott A. Gerber, Shohta Kodama, Joshua E. Elias, Sean A. Beausoleil, Denise Faustman, and Steven P. Gygi
Mol Cell Proteomics 2005 4: 1459-1470. First Published on July 21, 2005; doi:10.1074/mcp.M500137-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Microglial Activation Induced by Neurodegeneration: A Proteomic Analysis

Yong Zhou, Yan Wang, Monika Kovacs, Jinghua Jin, and Jing Zhang
Mol Cell Proteomics 2005 4: 1471-1479. First Published on June 22, 2005; doi:10.1074/mcp.M500114-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

An Approach to Studying Lung Cancer-related Proteins in Human Blood

Ting Xiao, Wantao Ying, Lei Li, Zhi Hu, Ying Ma, Liyan Jiao, Jinfang Ma, Yun Cai, Dongmei Lin, Suping Guo, Naijun Han, Xuebing Di, Min Li, Dechao Zhang, Kai Su, Jinsong Yuan, Hongwei Zheng, Meixia Gao, Jie He, Susheng Shi, Wuju Li, Ningzhi Xu, Husheng Zhang, Yan Liu, Kaitai Zhang, Yanning Gao, Xiaohong Qian, and Shujun Cheng
Mol Cell Proteomics 2005 4: 1480-1486. First Published on June 20, 2005; doi:10.1074/mcp.M500055-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics

William M. Old, Karen Meyer-Arendt, Lauren Aveline-Wolf, Kevin G. Pierce, Alex Mendoza, Joel R. Sevinsky, Katheryn A. Resing, and Natalie G. Ahn
Mol Cell Proteomics 2005 4: 1487-1502. First Published on June 23, 2005; doi:10.1074/mcp.M500084-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Proteomic Analysis of Human Neutrophil Granules

George Lominadze, David W. Powell, Greg C. Luerman, Andrew J. Link, Richard A. Ward, and Kenneth R. McLeish
Mol Cell Proteomics 2005 4: 1503-1521. First Published on June 28, 2005; doi:10.1074/mcp.M500143-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Proteomic and Transcriptomic Analyses of Macrophages with an Increased Resistance to Oxidized Low Density Lipoprotein (oxLDL)-induced Cytotoxicity Generated by Chronic Exposure to oxLDL

James P. Conway and Michael Kinter
Mol Cell Proteomics 2005 4: 1522-1540. First Published on July 8, 2005; doi:10.1074/mcp.M500111-MCP200 [Abstract] [Full Text] [PDF]  

Concentrations of Glycolytic Enzymes and Other Cytosolic Proteins in the Diffusible Fraction of a Vertebrate Muscle Proteome

David W. Maughan, Josh A. Henkin, and Jim O. Vigoreaux
Mol Cell Proteomics 2005 4: 1541-1549. First Published on June 27, 2005; doi:10.1074/mcp.M500053-MCP200 [Abstract] [Full Text] [PDF]  

Peptidyl-Lys Metalloendopeptidase-catalyzed ¹⁸O Labeling for Comparative Proteomics: Application to Cytokine/Lipolysaccharide-treated Human Retinal Pigment Epithelium Cell Line

K. C. Sekhar Rao, Vikram Palamalai, Jane R. Dunlevy, and Masaru Miyagi
Mol Cell Proteomics 2005 4: 1550-1557. First Published on July 5, 2005; doi:10.1074/mcp.M500150-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

High Throughput Identification of Potential Arabidopsis Mitogen-activated Protein Kinases Substrates

Tanja Feilner, Claus Hultschig, Justin Lee, Svenja Meyer, Richard G. H. Immink, Andrea Koenig, Alexandra Possling, Harald Seitz, Allan Beveridge, Dierk Scheel, Dolores J. Cahill, Hans Lehrach, Jürgen Kreutzberger, and Birgit Kersten
Mol Cell Proteomics 2005 4: 1558-1568. First Published on July 11, 2005; doi:10.1074/mcp.M500007-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

A Compendium of Signals and Responses Triggered by Prodeath and Prosurvival Cytokines

Suzanne Gaudet, Kevin A. Janes, John G. Albeck, Emily A. Pace, Douglas A. Lauffenburger, and Peter K. Sorger
Mol Cell Proteomics 2005 4: 1569-1590. First Published on July 18, 2005; doi:10.1074/mcp.M500158-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Down-regulation of the Anti-inflammatory Protein Annexin A1 in Cystic Fibrosis Knock-out Mice and Patients

Noura Bensalem, Ana Paula Ventura, Benoît Vallée, Joanna Lipecka, Danielle Tondelier, Noélie Davezac, Alexandre Dos Santos, Mauro Perretti, Anne Fajac, Isabelle Sermet-Gaudelus, Michel Renouil, Jean-François Lesure, Frédéric Halgand, Olivier Laprévote, and Aleksander Edelman
Mol Cell Proteomics 2005 4: 1591-1601. First Published on July 12, 2005; doi:10.1074/mcp.M500019-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Functional Screening of Serine Protease Inhibitors in the Medical Leech Hirudo medicinalis Monitored by Intensity Fading MALDI-TOF MS

Oscar Yanes, Josep Villanueva, Enrique Querol, and Francesc X. Aviles
Mol Cell Proteomics 2005 4: 1602-1613. First Published on July 18, 2005; doi:10.1074/mcp.M500145-MCP200 [Abstract] [Full Text] [PDF]  

Differential Multisite Phosphorylation of the Trehalose-6-phosphate Synthase Gene Family in Arabidopsis thaliana: A Mass Spectrometry-based Process for Multiparallel Peptide Library Phosphorylation Analysis

Mirko Glinski and Wolfram Weckwerth
Mol Cell Proteomics 2005 4: 1614-1625. First Published on July 19, 2005; doi:10.1074/mcp.M500134-MCP200 [Abstract] [Full Text] [PDF]  

Technology:

A Method of Mapping Protein Sumoylation Sites by Mass Spectrometry Using a Modified Small Ubiquitin-like Modifier 1 (SUMO-1) and a Computational Program

Matthew Knuesel, Hiu Tom Cheung, Micah Hamady, Kristen K. B. Barthel, and Xuedong Liu
Mol Cell Proteomics 2005 4: 1626-1636. First Published on July 14, 2005; doi:10.1074/mcp.T500011-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Information:

Calendar

Mol Cell Proteomics 2005 4: 1637-1638. [Full Text] [PDF]  

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