Research:

Genetic Association, Post-translational Modification, and Protein-Protein Interactions in Type 2 Diabetes Mellitus

Amitabh Sharma, Sreenivas Chavali, Anubha Mahajan, Rubina Tabassum, Vijaya Banerjee, Nikhil Tandon, and Dwaipayan Bharadwaj
Mol Cell Proteomics 2005 4: 1029-1037. First Published on May 10, 2005; doi:10.1074/mcp.M500024-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Quantification of Gel-separated Proteins and Their Phosphorylation Sites by LC-MS Using Unlabeled Internal Standards: Analysis of Phosphoprotein Dynamics in a B Cell Lymphoma Cell Line

Pedro R. Cutillas, Barbara Geering, Mike D. Waterfield, and Bart Vanhaesebroeck
Mol Cell Proteomics 2005 4: 1038-1051. First Published on May 5, 2005; doi:10.1074/mcp.M500078-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

An Immunoproteomic Approach for Identification of Clinical Biomarkers for Monitoring Disease: Application to Cystic Fibrosis

Susanne K. Pedersen, Andrew J. Sloane, Sindhu S. Prasad, Lucille T. Sebastian, Robyn A. Lindner, Michael Hsu, Michael Robinson, Peter T. Bye, Ron P. Weinberger, and Jenny L. Harry
Mol Cell Proteomics 2005 4: 1052-1060. First Published on May 18, 2005; doi:10.1074/mcp.M400175-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Metabolic Activation-related CD147-CD98 Complex

Daosong Xu and Martin E. Hemler
Mol Cell Proteomics 2005 4: 1061-1071. First Published on May 18, 2005; doi:10.1074/mcp.M400207-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Proteome Analysis of the Rice Etioplast: Metabolic and Regulatory Networks and Novel Protein Functions

Anne von Zychlinski, Torsten Kleffmann, Nandini Krishnamurthy, Kimmen Sjölander, Sacha Baginsky, and Wilhelm Gruissem
Mol Cell Proteomics 2005 4: 1072-1084. First Published on May 18, 2005; doi:10.1074/mcp.M500018-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Difference in Mass Analysis Using Labeled Lysines (DIMAL-K): A New, Efficient Proteomic Quantification Method Applied to the Analysis of Astrocytic Secretomes

Nicolas Delcourt, Patrick Jouin, Joël Poncet, Emmanuelle Demey, Eric Mauger, Joël Bockaert, Philippe Marin, and Nathalie Galéotti
Mol Cell Proteomics 2005 4: 1085-1094. First Published on May 18, 2005; doi:10.1074/mcp.M500040-MCP200 [Abstract] [Full Text] [PDF]  

Large Scale Protein Identification in Intracellular Aquaporin-2 Vesicles from Renal Inner Medullary Collecting Duct

Maria Barile, Trairak Pisitkun, Ming-Jiun Yu, Chung-Lin Chou, Michael J. Verbalis, Rong-Fong Shen, and Mark A. Knepper
Mol Cell Proteomics 2005 4: 1095-1106. First Published on May 18, 2005; doi:10.1074/mcp.M500049-MCP200 [Abstract] [Full Text] [PDF] Supplemental Tables  

Systematic Analysis of the Epidermal Growth Factor Receptor by Mass Spectrometry Reveals Stimulation-dependent Multisite Phosphorylation

Elisabetta Boeri Erba, Elena Bergatto, Sara Cabodi, Lorenzo Silengo, Guido Tarone, Paola Defilippi, and Ole N. Jensen
Mol Cell Proteomics 2005 4: 1107-1121. First Published on May 18, 2005; doi:10.1074/mcp.M500070-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Differential Impact of Environmental Stresses on the Pea Mitochondrial Proteome

Nicolas L. Taylor, Joshua L. Heazlewood, David A. Day, and A. Harvey Millar
Mol Cell Proteomics 2005 4: 1122-1133. First Published on May 23, 2005; doi:10.1074/mcp.M400210-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Multiple Reaction Monitoring to Identify Sites of Protein Phosphorylation with High Sensitivity

Richard D. Unwin, John R. Griffiths, Michael K. Leverentz, Agnes Grallert, Iain M. Hagan, and Anthony D. Whetton
Mol Cell Proteomics 2005 4: 1134-1144. First Published on May 27, 2005; doi:10.1074/mcp.M500113-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Non-stoichiometric Relationship between Clathrin Heavy and Light Chains Revealed by Quantitative Comparative Proteomics of Clathrin-coated Vesicles from Brain and Liver

Martine Girard, Patrick D. Allaire, Peter S. McPherson, and Francois Blondeau
Mol Cell Proteomics 2005 4: 1145-1154. First Published on June 2, 2005; doi:10.1074/mcp.M500043-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Novel Src Homology 3 Domain-binding Motifs Identified from Proteomic Screen of a Pro-rich Region

Christina Y. H. Jia, Jing Nie, Chenggang Wu, Chengjun Li, and Shawn S.-C. Li
Mol Cell Proteomics 2005 4: 1155-1166. First Published on May 31, 2005; doi:10.1074/mcp.M500108-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Technology:

Isotopically Coded Cleavable Cross-linker for Studying Protein-Protein Interaction and Protein Complexes

Evgeniy V. Petrotchenko, Vyacheslav K. Olkhovik, and Christoph H. Borchers
Mol Cell Proteomics 2005 4: 1167-1179. First Published on May 18, 2005; doi:10.1074/mcp.T400016-MCP200 [Abstract] [Full Text] [PDF]  

New Data Base-independent, Sequence Tag-based Scoring of Peptide MS/MS Data Validates Mowse Scores, Recovers Below Threshold Data, Singles Out Modified Peptides, and Assesses the Quality of MS/MS Techniques

Mikhail M. Savitski, Michael L. Nielsen, and Roman A. Zubarev
Mol Cell Proteomics 2005 4: 1180-1188. First Published on May 22, 2005; doi:10.1074/mcp.T500009-MCP200 [Abstract] [Full Text] [PDF]  

Dataset:

Comprehensive Analysis of a Multidimensional Liquid Chromatography Mass Spectrometry Dataset Acquired on a Quadrupole Selecting, Quadrupole Collision Cell, Time-of-flight Mass Spectrometer: I. How Much of the Data is Theoretically Interpretable by Search Engines?

Robert J. Chalkley, Peter R. Baker, Kirk C. Hansen, Katalin F. Medzihradszky, Nadia P. Allen, Michael Rexach, and Alma L. Burlingame
Mol Cell Proteomics 2005 4: 1189-1193. First Published on May 27, 2005; doi:10.1074/mcp.D500001-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data/Link to BIMSR  

Comprehensive Analysis of a Multidimensional Liquid Chromatography Mass Spectrometry Dataset Acquired on a Quadrupole Selecting, Quadrupole Collision Cell, Time-of-flight Mass Spectrometer: II. New Developments in Protein Prospector Allow for Reliable and Comprehensive Automatic Analysis of Large Datasets

Robert J. Chalkley, Peter R. Baker, Lan Huang, Kirk C. Hansen, Nadia P. Allen, Michael Rexach, and Alma L. Burlingame
Mol Cell Proteomics 2005 4: 1194-1204. First Published on June 3, 2005; doi:10.1074/mcp.D500002-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Localization, Annotation, and Comparison of the Escherichia coli K-12 Proteome under Two States of Growth

Ana Lopez-Campistrous, Paul Semchuk, Lorne Burke, Taunja Palmer-Stone, Stephen J. Brokx, Gordon Broderick, Drell Bottorff, Sandra Bolch, Joel H. Weiner, and Michael J. Ellison
Mol Cell Proteomics 2005 4: 1205-1209. First Published on May 19, 2005; doi:10.1074/mcp.D500006-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Information:

Additions & Corrections

Mol Cell Proteomics 2005 4: 1210. [Full Text] [PDF]  

Calendar

Mol Cell Proteomics 2005 4: 1211-1212. [Full Text] [PDF]  

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