Editorials:

Protein Identification: The Good, the Bad, and the Ugly

Ralph A. Bradshaw, Alma L. Burlingame, Steve Carr, and Ruedi Aebersold
Mol Cell Proteomics 2005 4: 1221-1222. [Full Text] [PDF]  

Revised Draft Guidelines for Proteomic Data Publication

Mol Cell Proteomics 2005 4: 1223-1225. [Full Text] [PDF]  

Research:

Probing Lysine Acetylation in Proteins: Strategies, Limitations, and Pitfalls of in Vitro Acetyltransferase Assays

Wilma Dormeyer, Melanie Ott, and Martina Schnölzer
Mol Cell Proteomics 2005 4: 1226-1239. First Published on June 2, 2005; doi:10.1074/mcp.M500047-MCP200 [Abstract] [Full Text] [PDF]  

Time-resolved Mass Spectrometry of Tyrosine Phosphorylation Sites in the Epidermal Growth Factor Receptor Signaling Network Reveals Dynamic Modules

Yi Zhang, Alejandro Wolf-Yadlin, Phillip L. Ross, Darryl J. Pappin, John Rush, Douglas A. Lauffenburger, and Forest M. White
Mol Cell Proteomics 2005 4: 1240-1250. First Published on June 11, 2005; doi:10.1074/mcp.M500089-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Differential Proteomic Analysis of Bronchoalveolar Lavage Fluid in Asthmatics following Segmental Antigen Challenge

Jiang Wu, Michiko Kobayashi, Eric A. Sousa, Wei Liu, Jie Cai, Samuel J. Goldman, Andrew J. Dorner, Steven J. Projan, Mani S. Kavuru, Yongchang Qiu, and Mary Jane Thomassen
Mol Cell Proteomics 2005 4: 1251-1264. First Published on June 12, 2005; doi:10.1074/mcp.M500041-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein

Yasushi Ishihama, Yoshiya Oda, Tsuyoshi Tabata, Toshitaka Sato, Takeshi Nagasu, Juri Rappsilber, and Matthias Mann
Mol Cell Proteomics 2005 4: 1265-1272. First Published on June 14, 2005; doi:10.1074/mcp.M500061-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Proteomic Identification of Insulin-like Growth Factor-binding Protein-6 Induced by Sublethal H₂O₂ Stress from Human Diploid Fibroblasts

Lifang Xie, George Tsaprailis, and Qin M. Chen
Mol Cell Proteomics 2005 4: 1273-1283. First Published on June 14, 2005; doi:10.1074/mcp.M500032-MCP200 [Abstract] [Full Text] [PDF]  

A Combined Proteome and Microarray Investigation of Inorganic Phosphate-induced Pre-osteoblast Cells

Kelly A. Conrads, Ming Yi, Kerri A. Simpson, David A. Lucas, Corinne E. Camalier, Li-Rong Yu, Timothy D. Veenstra, Robert M. Stephens, Thomas P. Conrads, and George R. Beck, Jr.
Mol Cell Proteomics 2005 4: 1284-1296. First Published on June 14, 2005; doi:10.1074/mcp.M500082-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Expression Clustering Reveals Detailed Co-expression Patterns of Functionally Related Proteins during B Cell Differentiation: A Proteomic Study Using a Combination of One-Dimensional Gel Electrophoresis, LC-MS/MS, and Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)

Edwin P. Romijn, Chantal Christis, Marnix Wieffer, Joost W. Gouw, Asier Fullaondo, Peter van der Sluijs, Ineke Braakman, and Albert J. R. Heck
Mol Cell Proteomics 2005 4: 1297-1310. First Published on June 15, 2005; doi:10.1074/mcp.M500123-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Differentially Expressed Proteins in the Pancreas of Diet-induced Diabetic Mice

Linghua Qiu, Edward O. List, and John J. Kopchick
Mol Cell Proteomics 2005 4: 1311-1318. First Published on June 16, 2005; doi:10.1074/mcp.M500016-MCP200 [Abstract] [Full Text] [PDF]  

Accelerated Discovery of Novel Protein Function in Cultured Human Cells

Emily Hodges, Jenny Stjerndahl Redelius, Weilin Wu, and Christer Höög
Mol Cell Proteomics 2005 4: 1319-1327. First Published on June 19, 2005; doi:10.1074/mcp.M500117-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

A Software Suite for the Generation and Comparison of Peptide Arrays from Sets of Data Collected by Liquid Chromatography-Mass Spectrometry

Xiao-jun Li, Eugene C. Yi, Christopher J. Kemp, Hui Zhang, and Ruedi Aebersold
Mol Cell Proteomics 2005 4: 1328-1340. First Published on July 26, 2005; doi:10.1074/mcp.M500141-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

MALDI-TOF Mass Spectrometry Analysis of Cerebrospinal Fluid Tryptic Peptide Profiles to Diagnose Leptomeningeal Metastases in Patients with Breast Cancer

Lennard J. Dekker, Willem Boogerd, Guenther Stockhammer, Johannes C. Dalebout, Ivar Siccama, Pingpin Zheng, Johannes M. Bonfrer, Jan J. Verschuuren, Guido Jenster, Marcel M. Verbeek, Theo M. Luider, and Peter A. Sillevis Smitt
Mol Cell Proteomics 2005 4: 1341-1349. First Published on June 21, 2005; doi:10.1074/mcp.M500081-MCP200 [Abstract] [Full Text] [PDF]  

Analysis of Intimal Proteoglycans in Atherosclerosis-prone and Atherosclerosis-resistant Human Arteries by Mass Spectrometry

Paul Talusan, Shahinaz Bedri, Suping Yang, Taj Kattapuram, Nilsa Silva, Peter J. Roughley, and James R. Stone
Mol Cell Proteomics 2005 4: 1350-1357. First Published on June 21, 2005; doi:10.1074/mcp.M500088-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Dynamic Changes in Protein-Protein Interaction and Protein Phosphorylation Probed with Amine-reactive Isotope Tag

Marcus B. Smolka, Claudio P. Albuquerque, Sheng-hong Chen, Kristina H. Schmidt, Xiao X. Wei, Richard D. Kolodner, and Huilin Zhou
Mol Cell Proteomics 2005 4: 1358-1369. First Published on June 22, 2005; doi:10.1074/mcp.M500115-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

The Subunit Structure and Dynamics of the 20S Proteasome in Chicken Skeletal Muscle

Julia R. Hayter, Mary K. Doherty, Colin Whitehead, Heather McCormack, Simon J. Gaskell, and Robert J. Beynon
Mol Cell Proteomics 2005 4: 1370-1381. First Published on June 19, 2005; doi:10.1074/mcp.M400138-MCP200 [Abstract] [Full Text] [PDF]  

Technology:

Profiling of Alopecia Areata Autoantigens Based on Protein Microarray Technology

Angelika Lueking, Otmar Huber, Christopher Wirths, Kirsten Schulte, Karola M. Stieler, Ulrike Blume-Peytavi, Axel Kowald, Karin Hensel-Wiegel, Rudolf Tauber, Hans Lehrach, Helmut E. Meyer, and Dolores J. Cahill
Mol Cell Proteomics 2005 4: 1382-1390. First Published on June 6, 2005; doi:10.1074/mcp.T500004-MCP200 [Abstract] [Full Text] [PDF]  

Quantitative Neuropeptidomics of Microwave-irradiated Mouse Brain and Pituitary

Fa-Yun Che, Jihyeon Lim, Hui Pan, Reeta Biswas, and Lloyd D. Fricker
Mol Cell Proteomics 2005 4: 1391-1405. First Published on June 21, 2005; doi:10.1074/mcp.T500010-MCP200 [Abstract] [Full Text] [PDF]  

Dataset:

A Dataset of Human Cornea Proteins Identified by Peptide Mass Fingerprinting and Tandem Mass Spectrometry

Henrik Karring, Ida B. Thøgersen, Gordon K. Klintworth, Torben Møller-Pedersen, and Jan J. Enghild
Mol Cell Proteomics 2005 4: 1406-1408. First Published on May 23, 2005; doi:10.1074/mcp.D500003-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Information:

Calendar

Mol Cell Proteomics 2005 4: 1409-1410. [Full Text] [PDF]  

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