Special Issue: 8th International Symposium On Mass Spectrometry In The Life Sciences:

Statistical Similarities between Transcriptomics and Quantitative Shotgun Proteomics Data

Norman Pavelka, Marjorie L. Fournier, Selene K. Swanson, Mattia Pelizzola, Paola Ricciardi-Castagnoli, Laurence Florens, and Michael P. Washburn
Mol Cell Proteomics 2008 7: 631-644. First Published on November 19, 2007; doi:10.1074/mcp.M700240-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Combined Enzymatic and Data Mining Approaches for Comprehensive Phosphoproteome Analyses: Application to Cell Signaling Events of Interferon--Stimulated Macrophages

Maria Marcantonio, Matthias Trost, Mathieu Courcelles, Michel Desjardins, and Pierre Thibault
Mol Cell Proteomics 2008 7: 645-660. First Published on November 14, 2007; doi:10.1074/mcp.M700383-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

SIMAC (Sequential Elution from IMAC), a Phosphoproteomics Strategy for the Rapid Separation of Monophosphorylated from Multiply Phosphorylated Peptides

Tine E. Thingholm, Ole N. Jensen, Phillip J. Robinson, and Martin R. Larsen
Mol Cell Proteomics 2008 7: 661-671. First Published on November 26, 2007; doi:10.1074/mcp.M700362-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and Proteome Quantitation of Mouse Embryonic Stem Cells to a Depth of 5,111 Proteins

Johannes Graumann, Nina C. Hubner, Jeong Beom Kim, Kinarm Ko, Markus Moser, Chanchal Kumar, Jürgen Cox, Hans Schöler, and Matthias Mann
Mol Cell Proteomics 2008 7: 672-683. First Published on November 28, 2007; doi:10.1074/mcp.M700460-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Quantitative Analysis of Synaptic Phosphorylation and Protein Expression

Jonathan C. Trinidad, Agnes Thalhammer, Christian G. Specht, Aenoch J. Lynn, Peter R. Baker, Ralf Schoepfer, and Alma L. Burlingame
Mol Cell Proteomics 2008 7: 684-696. First Published on December 3, 2007; doi:10.1074/mcp.M700170-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Modulation of the Phagosome Proteome by Interferon-

Isabelle Jutras, Mathieu Houde, Nathan Currier, Jonathan Boulais, Sophie Duclos, Sylvie LaBoissière, Eric Bonneil, Paul Kearney, Pierre Thibault, Eustache Paramithiotis, Patrice Hugo, and Michel Desjardins
Mol Cell Proteomics 2008 7: 697-715. First Published on December 21, 2007; doi:10.1074/mcp.M700267-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Quantitative Proteomics Analysis of the Effects of Ionizing Radiation in Wild Type and p53^K317R Knock-in Mouse Thymocytes

Lisa M. Miller Jenkins, Sharlyn J. Mazur, Matteo Rossi, Olga Gaidarenko, Yang Xu, and Ettore Appella
Mol Cell Proteomics 2008 7: 716-727. First Published on January 4, 2008; doi:10.1074/mcp.M700482-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Proteomics Studies of Brassinosteroid Signal Transduction Using Prefractionation and Two-dimensional DIGE

Wenqiang Tang, Zhiping Deng, Juan A. Oses-Prieto, Nagi Suzuki, Shengwei Zhu, Xin Zhang, Alma L. Burlingame, and Zhi-Yong Wang
Mol Cell Proteomics 2008 7: 728-738. First Published on January 8, 2008; doi:10.1074/mcp.M700358-MCP200 [Abstract] [Full Text] [PDF]  

CrossSearch, a User-friendly Search Engine for Detecting Chemically Cross-linked Peptides in Conjugated Proteins

Owen W. Nadeau, Gerald J. Wyckoff, Justin E. Paschall, Antonio Artigues, Jessica Sage, Maria T. Villar, and Gerald M. Carlson
Mol Cell Proteomics 2008 7: 739-749. First Published on February 16, 2008; doi:10.1074/mcp.M800020-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Coupled Global and Targeted Proteomics of Human Embryonic Stem Cells during Induced Differentiation

Anastasia K. Yocum, Theresa E. Gratsch, Nancy Leff, John R. Strahler, Christie L. Hunter, Angela K. Walker, George Michailidis, Gilbert S. Omenn, K. Sue O'Shea, and Philip C. Andrews
Mol Cell Proteomics 2008 7: 750-767. First Published on February 26, 2008; doi:10.1074/mcp.M700399-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Research:

Defining the Specificity Space of the Human Src Homology 2 Domain

Haiming Huang, Lei Li, Chenggang Wu, David Schibli, Karen Colwill, Sucan Ma, Chengjun Li, Protiva Roy, Krystina Ho, Zhou Songyang, Tony Pawson, Youhe Gao, and Shawn S.-C. Li
Mol Cell Proteomics 2008 7: 768-784. First Published on October 22, 2007; doi:10.1074/mcp.M700312-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Quantitative Analysis of Snake Venoms Using Soluble Polymer-based Isotope Labeling

Jacob A. Galan, Minjie Guo, Elda E. Sanchez, Esteban Cantu, Alexis Rodriguez-Acosta, John C. Perez, and W. Andy Tao
Mol Cell Proteomics 2008 7: 785-799. First Published on December 18, 2007; doi:10.1074/mcp.M700321-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

ANIBAL, Stable Isotope-based Quantitative Proteomics by Aniline and Benzoic Acid Labeling of Amino and Carboxylic Groups

Alexandre Panchaud, Jenny Hansson, Michael Affolter, Rachid Bel Rhlid, Stéphane Piu, Philippe Moreillon, and Martin Kussmann
Mol Cell Proteomics 2008 7: 800-812. First Published on December 13, 2007; doi:10.1074/mcp.M700216-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

Comparative Evaluation of Current Peptide Production Platforms Used in Absolute Quantification in Proteomics

Hamid Mirzaei, Joshua K. McBee, Julian Watts, and Ruedi Aebersold
Mol Cell Proteomics 2008 7: 813-823. First Published on December 17, 2007; doi:10.1074/mcp.M700495-MCP200 [Abstract] [Full Text] [PDF] Supplemental Data  

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Mol Cell Proteomics 2008 7: 824. [Full Text] [PDF]  

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