Table I Summary of RNA-seq data, databases sizes, and results from de novo, genome guided PIT and standard searches
Standard (human and adenovirus)PIT De novo assemblyStandard (human only)Genome guided assembly
Transcriptsn/a103,431n/a37,024
Average transcript lengthn/a670.03n/a1,007.21
Total components/genesn/a92,661n/a33,747
Transcript N50n/a1,040n/a1,764
Proteins/ORFs88,70178,49388,66554,184
Identified peptides26,40125,90725,97021,601
Identified PAGs3,0152,9262,9862,713
Peptide level overlap88%77%
PAG level overlap87%75%