Table of Contents

Research

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  Quantitative Proteomics Reveals Regulation of Karyopherin Subunit Alpha-2 (KPNA2) and Its Potential Novel Cargo Proteins in Nonsmall Cell Lung Cancer

  Chun-I Wang, Kun-Yi Chien, Chih-Liang Wang, Hao-Ping Liu, Chia-Chen Cheng, Yu-Sun Chang, Jau-Song Yu and Chia-Jung Yu

  Molecular & Cellular Proteomics November 1, 2012, First published on July 25, 2012, 11 (11) 1105-1122; https://doi.org/10.1074/mcp.M111.016592
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  Proteomic and Transcriptomic Profiling of Staphylococcus aureus Surface LPXTG-proteins: Correlation with agr Genotypes and Adherence Phenotypes

  Mathilde Ythier, Grégory Resch, Patrice Waridel, Alexandre Panchaud, Aurélie Gfeller, Paul Majcherczyk, Manfredo Quadroni and Philippe Moreillon

  Molecular & Cellular Proteomics November 1, 2012, First published on July 25, 2012, 11 (11) 1123-1139; https://doi.org/10.1074/mcp.M111.014191
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  Quantitative Phosphoproteomic Analysis of Soybean Root Hairs Inoculated with Bradyrhizobium japonicum

  Tran Hong Nha Nguyen, Laurent Brechenmacher, Joshua T. Aldrich, Therese R. Clauss, Marina A. Gritsenko, Kim K. Hixson, Marc Libault, Kiwamu Tanaka, Feng Yang, Qiuming Yao, Ljiljana Paša-Tolić, Dong Xu, Henry T. Nguyen and Gary Stacey

  Molecular & Cellular Proteomics November 1, 2012, First published on July 25, 2012, 11 (11) 1140-1155; https://doi.org/10.1074/mcp.M112.018028
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  Complementary Proteome and Transcriptome Profiling in Phosphate-deficient Arabidopsis Roots Reveals Multiple Levels of Gene Regulation

  Ping Lan, Wenfeng Li and Wolfgang Schmidt

  Molecular & Cellular Proteomics November 1, 2012, First published on July 25, 2012, 11 (11) 1156-1166; https://doi.org/10.1074/mcp.M112.020461
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  Integrative Proteomic Profiling of Protein Activity and Interactions Using Protein Arrays

  Se-Hui Jung, Kangseung Lee, Deok-Hoon Kong, Woo Jin Kim, Young-Myeong Kim and Kwon-Soo Ha

  Molecular & Cellular Proteomics November 1, 2012, First published on July 26, 2012, 11 (11) 1167-1176; https://doi.org/10.1074/mcp.M112.016964
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  Profiling Lipid–protein Interactions Using Nonquenched Fluorescent Liposomal Nanovesicles and Proteome Microarrays

  Kuan-Yi Lu, Sheng-Ce Tao, Tzu-Ching Yang, Yu-Hsuan Ho, Chia-Hsien Lee, Chen-Ching Lin, Hsueh-Fen Juan, Hsuan-Cheng Huang, Chin-Yu Yang, Ming-Shuo Chen, Yu-Yi Lin, Jin-Ying Lu, Heng Zhu and Chien-Sheng Chen

  Molecular & Cellular Proteomics November 1, 2012, First published on July 26, 2012, 11 (11) 1177-1190; https://doi.org/10.1074/mcp.M112.017426
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  A Novel Method for the Simultaneous Enrichment, Identification, and Quantification of Phosphopeptides and Sialylated Glycopeptides Applied to a Temporal Profile of Mouse Brain Development

  Giuseppe Palmisano, Benjamin L. Parker, Kasper Engholm-Keller, Sara Eun Lendal, Katarzyna Kulej, Melanie Schulz, Veit Schwämmle, Mark E. Graham, Henrik Saxtorph, Stuart J. Cordwell and Martin R. Larsen

  Molecular & Cellular Proteomics November 1, 2012, First published on July 26, 2012, 11 (11) 1191-1202; https://doi.org/10.1074/mcp.M112.017509
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  Diversity in the Protein N-Glycosylation Pathways Within the Campylobacter Genus

  Harald Nothaft, Nichollas E. Scott, Evgeny Vinogradov, Xin Liu, Rui Hu, Bernadette Beadle, Christopher Fodor, William G. Miller, Jianjun Li, Stuart J. Cordwell and Christine M. Szymanski

  Molecular & Cellular Proteomics November 1, 2012, First published on August 2, 2012, 11 (11) 1203-1219; https://doi.org/10.1074/mcp.M112.021519
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  Aurora B-dependent Regulation of Class IIa Histone Deacetylases by Mitotic Nuclear Localization Signal Phosphorylation

  Amanda J. Guise, Todd M. Greco, Irene Y. Zhang, Fang Yu and Ileana M. Cristea

  Molecular & Cellular Proteomics November 1, 2012, First published on August 2, 2012, 11 (11) 1220-1229; https://doi.org/10.1074/mcp.M112.021030
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  Interactome-wide Analysis Identifies End-binding Protein 1 as a Crucial Component for the Speck-like Particle Formation of Activated Absence in Melanoma 2 (AIM2) Inflammasomes

  Li-Jie Wang, Chia-Wei Hsu, Chiu-Chin Chen, Ying Liang, Lih-Chyang Chen, David M. Ojcius, Ngan-Ming Tsang, Chuen Hsueh, Chih-Ching Wu and Yu-Sun Chang

  Molecular & Cellular Proteomics November 1, 2012, First published on August 6, 2012, 11 (11) 1230-1244; https://doi.org/10.1074/mcp.M112.020594
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  Peptidomics of Three Bothrops Snake Venoms: Insights Into the Molecular Diversification of Proteomes and Peptidomes

  Alexandre K. Tashima, André Zelanis, Eduardo S. Kitano, Danielle Ianzer, Robson L. Melo, Vanessa Rioli, Sávio S. Sant'anna, Ana C. G. Schenberg, Antônio C. M. Camargo and Solange M. T. Serrano

  Molecular & Cellular Proteomics November 1, 2012, First published on August 6, 2012, 11 (11) 1245-1262; https://doi.org/10.1074/mcp.M112.019331
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  Five Friends of Methylated Chromatin Target of Protein-Arginine-Methyltransferase[Prmt]-1 (Chtop), a Complex Linking Arginine Methylation to Desumoylation

  Pavlos Fanis, Nynke Gillemans, Ali Aghajanirefah, Farzin Pourfarzad, Jeroen Demmers, Fatemehsadat Esteghamat, Ratna K. Vadlamudi, Frank Grosveld, Sjaak Philipsen and Thamar B. van Dijk

  Molecular & Cellular Proteomics November 1, 2012, First published on August 7, 2012, 11 (11) 1263-1273; https://doi.org/10.1074/mcp.M112.017194
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  The Amyloid Precursor Protein (APP) Family Members are Key Players in S-adenosylmethionine Formation by MAT2A and Modify BACE1 and PSEN1 Gene Expression-Relevance for Alzheimer's Disease

  Andreas Schrötter, Kathy Pfeiffer, Fouzi El Magraoui, Harald W. Platta, Ralf Erdmann, Helmut E. Meyer, Rupert Egensperger, Katrin Marcus and Thorsten Müller

  Molecular & Cellular Proteomics November 1, 2012, First published on August 9, 2012, 11 (11) 1274-1288; https://doi.org/10.1074/mcp.M112.019364
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  Protein-protein-interaction Network Organization of the Hypusine Modification System

  Henning Sievert, Simone Venz, Oscar Platas-Barradas, Vishnu M. Dhople, Martin Schaletzky, Claus-Henning Nagel, Melanie Braig, Michael Preukschas, Nora Pällmann, Carsten Bokemeyer, Tim H. Brümmendorf, Ralf Pörtner, Reinhard Walther, Kent E. Duncan, Joachim Hauber and Stefan Balabanov

  Molecular & Cellular Proteomics November 1, 2012, First published on August 10, 2012, 11 (11) 1289-1305; https://doi.org/10.1074/mcp.M112.019059
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  The Protein Composition of the Digestive Fluid from the Venus Flytrap Sheds Light on Prey Digestion Mechanisms

  Waltraud X. Schulze, Kristian W. Sanggaard, Ines Kreuzer, Anders D. Knudsen, Felix Bemm, Ida B. Thøgersen, Andrea Bräutigam, Line R. Thomsen, Simon Schliesky, Thomas F. Dyrlund, Maria Escalante-Perez, Dirk Becker, Jörg Schultz, Henrik Karring, Andreas Weber, Peter Højrup, Rainer Hedrich and Jan J. Enghild

  Molecular & Cellular Proteomics November 1, 2012, First published on August 12, 2012, 11 (11) 1306-1319; https://doi.org/10.1074/mcp.M112.021006
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  Secretomic Analysis Identifies Alpha-1 Antitrypsin (A1AT) as a Required Protein in Cancer Cell Migration, Invasion, and Pericellular Fibronectin Assembly for Facilitating Lung Colonization of Lung Adenocarcinoma Cells

  Ying-Hua Chang, Shu-Hui Lee, I-Chuang Liao, Shin-Huei Huang, Hung-Chi Cheng and Pao-Chi Liao

  Molecular & Cellular Proteomics November 1, 2012, First published on August 15, 2012, 11 (11) 1320-1339; https://doi.org/10.1074/mcp.M112.017384
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  A Deep Exploration of the Transcriptome and “Excretory/Secretory” Proteome of Adult Fascioloides magna

  Cinzia Cantacessi, Jason Mulvenna, Neil D. Young, Martin Kasny, Petr Horak, Ammar Aziz, Andreas Hofmann, Alex Loukas and Robin B. Gasser

  Molecular & Cellular Proteomics November 1, 2012, First published on August 16, 2012, 11 (11) 1340-1353; https://doi.org/10.1074/mcp.M112.019844
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  Proteomics and Deep Sequencing Comparison of Seasonally Active Venom Glands in the Platypus Reveals Novel Venom Peptides and Distinct Expression Profiles

  Emily S. W. Wong, David Morgenstern, Ehtesham Mofiz, Sara Gombert, Katrina M. Morris, Peter Temple-Smith, Marilyn B. Renfree, Camilla M. Whittington, Glenn F. King, Wesley C. Warren, Anthony T. Papenfuss and Katherine Belov

  Molecular & Cellular Proteomics November 1, 2012, First published on August 16, 2012, 11 (11) 1354-1364; https://doi.org/10.1074/mcp.M112.017491
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  Proteomic Characterization of Phagosomal Membrane Microdomains During Phagolysosome Biogenesis and Evolution

  Guillaume Goyette, Jonathan Boulais, Nicholas J. Carruthers, Christian R. Landry, Isabelle Jutras, Sophie Duclos, Jean-François Dermine, Stephen W. Michnick, Sylvie LaBoissière, Gilles Lajoie, Luis Barreiro, Pierre Thibault and Michel Desjardins

  Molecular & Cellular Proteomics November 1, 2012, First published on August 20, 2012, 11 (11) 1365-1377; https://doi.org/10.1074/mcp.M112.021048
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  Adenoviral E4 Gene Stimulates Secretion of Pigmental Epithelium Derived Factor (PEDF) that Maintains Long-term Survival of Human Glomerulus-derived Endothelial Cells

  Marina Jerebtsova, Namita Kumari, Yuri Obuhkov and Sergei Nekhai

  Molecular & Cellular Proteomics November 1, 2012, First published on August 21, 2012, 11 (11) 1378-1388; https://doi.org/10.1074/mcp.M112.020313
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  Total ApoE and ApoE4 Isoform Assays in an Alzheimer's Disease Case-control Study by Targeted Mass Spectrometry (n = 669): A Pilot Assay for Methionine-containing Proteotypic Peptides

  Romain Simon, Marion Girod, Catherine Fonbonne, Arnaud Salvador, Yohann Clément, Pierre Lantéri, Philippe Amouyel, Jean Charles Lambert and Jérôme Lemoine

  Molecular & Cellular Proteomics November 1, 2012, First published on August 23, 2012, 11 (11) 1389-1403; https://doi.org/10.1074/mcp.M112.018861
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  Potentially Novel Candidate Biomarkers for Head and Neck Squamous Cell Carcinoma Identified Using an Integrated Cell Line-based Discovery Strategy

  Lusia Sepiashvili, Angela Hui, Vladimir Ignatchenko, Willa Shi, Susie Su, Wei Xu, Shao Hui Huang, Brian O'Sullivan, John Waldron, Jonathan C. Irish, Bayardo Perez-Ordonez, Fei-Fei Liu and Thomas Kislinger

  Molecular & Cellular Proteomics November 1, 2012, First published on August 23, 2012, 11 (11) 1404-1415; https://doi.org/10.1074/mcp.M112.020933
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  Functional Interaction of the Ankylosing Spondylitis-associated Endoplasmic Reticulum Aminopeptidase 1 Polymorphism and HLA-B27 in Vivo

  Noel García-Medel, Alejandro Sanz-Bravo, Dung Van Nguyen, Begoña Galocha, Patricia Gómez-Molina, Adrián Martín-Esteban, Carlos Alvarez-Navarro and José A. López de Castro

  Molecular & Cellular Proteomics November 1, 2012, First published on August 23, 2012, 11 (11) 1416-1429; https://doi.org/10.1074/mcp.M112.019588
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  Native Tandem and Ion Mobility Mass Spectrometry Highlight Structural and Modular Similarities in Clustered-Regularly-Interspaced Shot-Palindromic-Repeats (CRISPR)-associated Protein Complexes From Escherichia coli and Pseudomonas aeruginosa

  Esther van Duijn, Ioana M. Barbu, Arjan Barendregt, Matthijs M. Jore, Blake Wiedenheft, Magnus Lundgren, Edze R. Westra, Stan J. J. Brouns, Jennifer A. Doudna, John van der Oost and Albert J. R. Heck

  Molecular & Cellular Proteomics November 1, 2012, First published on August 23, 2012, 11 (11) 1430-1441; https://doi.org/10.1074/mcp.M112.020263
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  Dicer-dependent and -independent Argonaute2 Protein Interaction Networks in Mammalian Cells

  Anne Frohn, H. Christian Eberl, Julia Stöhr, Elke Glasmacher, Sabine Rüdel, Vigo Heissmeyer, Matthias Mann and Gunter Meister

  Molecular & Cellular Proteomics November 1, 2012, First published on August 23, 2012, 11 (11) 1442-1456; https://doi.org/10.1074/mcp.M112.017756
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  Major Histocompatibility Complex Class II⁺ Invariant Chain Negative Breast Cancer Cells Present Unique Peptides that Activate Tumor-specific T Cells from Breast Cancer Patients

  Olesya Chornoguz, Alexei Gapeev, Michael C. O'Neill and Suzanne Ostrand-Rosenberg

  Molecular & Cellular Proteomics November 1, 2012, First published on August 31, 2012, 11 (11) 1457-1467; https://doi.org/10.1074/mcp.M112.019232