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Molecular & Cellular Proteomics

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Table of Contents

January 2013; Volume 12,Issue 1

Review

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    Popular Computational Methods to Assess Multiprotein Complexes Derived From Label-Free Affinity Purification and Mass Spectrometry (AP-MS) Experiments
    Irina M. Armean, Kathryn S. Lilley and Matthew W. B. Trotter
    Molecular & Cellular Proteomics January 1, 2013, First published on October 15, 2012, 12 (1) 1-13; https://doi.org/10.1074/mcp.R112.019554

Research

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    N-terminal Protein Processing: A Comparative Proteogenomic Analysis
    Stefano Bonissone, Nitin Gupta, Margaret Romine, Ralph A. Bradshaw and Pavel A. Pevzner
    Molecular & Cellular Proteomics January 1, 2013, First published on September 23, 2012, 12 (1) 14-28; https://doi.org/10.1074/mcp.M112.019075
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    Activity-dependent Protein Dynamics Define Interconnected Cores of Co-regulated Postsynaptic Proteins
    Jonathan C. Trinidad, Agnes Thalhammer, Alma L. Burlingame and Ralf Schoepfer
    Molecular & Cellular Proteomics January 1, 2013, First published on October 3, 2012, 12 (1) 29-41; https://doi.org/10.1074/mcp.M112.019976
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    Protein N-terminal Acetyltransferases Act as N-terminal Propionyltransferases In Vitro and In Vivo
    Håvard Foyn, Petra Van Damme, Svein I. Støve, Nina Glomnes, Rune Evjenth, Kris Gevaert and Thomas Arnesen
    Molecular & Cellular Proteomics January 1, 2013, First published on October 4, 2012, 12 (1) 42-54; https://doi.org/10.1074/mcp.M112.019299
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    Longitudinal Analysis of Maternal Plasma Apolipoproteins in Pregnancy: A Targeted Proteomics Approach
    Shannon K. Flood-Nichols, Deborah Tinnemore, Mark A. Wingerd, Ali I. Abu-Alya, Peter G. Napolitano, Jonathan D. Stallings and Danielle L. Ippolito
    Molecular & Cellular Proteomics January 1, 2013, First published on October 10, 2012, 12 (1) 55-64; https://doi.org/10.1074/mcp.M112.018192
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    The Proteome of Copper, Iron, Zinc, and Manganese Micronutrient Deficiency in Chlamydomonas reinhardtii
    Scott I. Hsieh, Madeli Castruita, Davin Malasarn, Eugen Urzica, Jonathan Erde, M. Dudley Page, Hiroaki Yamasaki, David Casero, Matteo Pellegrini, Sabeeha S. Merchant and Joseph A. Loo
    Molecular & Cellular Proteomics January 1, 2013, First published on October 13, 2012, 12 (1) 65-86; https://doi.org/10.1074/mcp.M112.021840
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    RACK1/Asc1p, a Ribosomal Node in Cellular Signaling
    Nicole Rachfall, Kerstin Schmitt, Susanne Bandau, Nadine Smolinski, Armin Ehrenreich, Oliver Valerius and Gerhard H. Braus
    Molecular & Cellular Proteomics January 1, 2013, First published on October 15, 2012, 12 (1) 87-105; https://doi.org/10.1074/mcp.M112.017277
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    Putting the Pieces Together: High-performance LC-MS/MS Provides Network-, Pathway-, and Protein-level Perspectives in Populus
    Paul Abraham, Richard J. Giannone, Rachel M. Adams, Udaya Kalluri, Gerald A. Tuskan and Robert L. Hettich
    Molecular & Cellular Proteomics January 1, 2013, First published on October 16, 2012, 12 (1) 106-119; https://doi.org/10.1074/mcp.M112.022996
  • Open Access
    A Bioinformatics Approach for Integrated Transcriptomic and Proteomic Comparative Analyses of Model and Non-sequenced Anopheline Vectors of Human Malaria Parasites
    Ceereena Ubaida Mohien, David R. Colquhoun, Derrick K. Mathias, John G. Gibbons, Jennifer S. Armistead, Maria C. Rodriguez, Mario Henry Rodriguez, Nathan J. Edwards, Jürgen Hartler, Gerhard G. Thallinger, David R. Graham, Jesus Martinez-Barnetche, Antonis Rokas and Rhoel R. Dinglasan
    Molecular & Cellular Proteomics January 1, 2013, First published on October 17, 2012, 12 (1) 120-131; https://doi.org/10.1074/mcp.M112.019596
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    Quantitative Proteomic Analysis in Metastatic Renal Cell Carcinoma Reveals a Unique Set of Proteins with Potential Prognostic Significance
    Olena Masui, Nicole M. A. White, Leroi V. DeSouza, Olga Krakovska, Ajay Matta, Shereen Metias, Bishoy Khalil, Alexander D. Romaschin, R. John Honey, Robert Stewart, Kenneth Pace, Georg A. Bjarnason, K. W. Michael Siu and George M. Yousef
    Molecular & Cellular Proteomics January 1, 2013, First published on October 17, 2012, 12 (1) 132-144; https://doi.org/10.1074/mcp.M112.020701
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    Identification of Cargo Proteins Specific for the Nucleocytoplasmic Transport Carrier Transportin by Combination of an in Vitro Transport System and Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)-based Quantitative Proteomics
    Makoto Kimura, Shingo Kose, Nobuaki Okumura, Kenichiro Imai, Maiko Furuta, Noriyuki Sakiyama, Kentaro Tomii, Paul Horton, Toshifumi Takao and Naoko Imamoto
    Molecular & Cellular Proteomics January 1, 2013, First published on October 19, 2012, 12 (1) 145-157; https://doi.org/10.1074/mcp.M112.019414
  • Open Access
    Quantification of the N-glycosylated Secretome by Super-SILAC During Breast Cancer Progression and in Human Blood Samples
    Paul J. Boersema, Tamar Geiger, Jacek R. Wiśniewski and Matthias Mann
    Molecular & Cellular Proteomics January 1, 2013, First published on October 22, 2012, 12 (1) 158-171; https://doi.org/10.1074/mcp.M112.023614
  • Open Access
    Comparative Proteomics of Two Life Cycle Stages of Stable Isotope-labeled Trypanosoma brucei Reveals Novel Components of the Parasite's Host Adaptation Machinery
    Falk Butter, Ferdinand Bucerius, Margaux Michel, Zdenka Cicova, Matthias Mann and Christian J. Janzen
    Molecular & Cellular Proteomics January 1, 2013, First published on October 22, 2012, 12 (1) 172-179; https://doi.org/10.1074/mcp.M112.019224
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    Quantitative Proteomics with siRNA Screening Identifies Novel Mechanisms of Trastuzumab Resistance in HER2 Amplified Breast Cancers
    Alaina P. Boyer, Timothy S. Collier, Ilan Vidavsky and Ron Bose
    Molecular & Cellular Proteomics January 1, 2013, First published on October 25, 2012, 12 (1) 180-193; https://doi.org/10.1074/mcp.M112.020115
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    Comparative Genomic and Proteomic Analysis of Cytoskeletal Changes in Dexamethasone-Treated Trabecular Meshwork Cells
    Ross Clark, Amanda Nosie, Teresa Walker, Jennifer A. Faralli, Mark S. Filla, Gregory Barrett-Wilt and Donna M. Peters
    Molecular & Cellular Proteomics January 1, 2013, First published on October 28, 2012, 12 (1) 194-206; https://doi.org/10.1074/mcp.M112.019745
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    Identification and Validation of Urinary Metabolite Biomarkers for Major Depressive Disorder
    Peng Zheng, Ying Wang, Liang Chen, Deyu Yang, Huaqing Meng, Dezhi Zhou, Jiaju Zhong, Yang Lei, N. D. Melgiri and Peng Xie
    Molecular & Cellular Proteomics January 1, 2013, First published on October 30, 2012, 12 (1) 207-214; https://doi.org/10.1074/mcp.M112.021816
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    A Combined Laser Microdissection and Mass Spectrometry Approach Reveals New Disease Relevant Proteins Accumulating in Aggregates of Filaminopathy Patients
    Rudolf A. Kley, Alexandra Maerkens, Yvonne Leber, Verena Theis, Anja Schreiner, Peter F. M. van der Ven, Julian Uszkoreit, Christian Stephan, Stefan Eulitz, Nicole Euler, Janbernd Kirschner, Klaus Müller, Helmut E. Meyer, Martin Tegenthoff, Dieter O. Fürst, Matthias Vorgerd, Thorsten Müller and Katrin Marcus
    Molecular & Cellular Proteomics January 1, 2013, First published on October 31, 2012, 12 (1) 215-227; https://doi.org/10.1074/mcp.M112.023176
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    Proteomic Analysis of Protease Resistant Proteins in the Diabetic Rat Kidney
    Sneha B. Bansode, Ashok D. Chougale, Rakesh S. Joshi, Ashok P. Giri, Subhash L. Bodhankar, Abhay M. Harsulkar and Mahesh J. Kulkarni
    Molecular & Cellular Proteomics January 1, 2013, First published on November 1, 2012, 12 (1) 228-236; https://doi.org/10.1074/mcp.M112.020651

Technological Innovation and Resources

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    A Simple and Effective Cleavable Linker for Chemical Proteomics Applications
    Yinliang Yang, Hannes Hahne, Bernhard Kuster and Steven H. L. Verhelst
    Molecular & Cellular Proteomics January 1, 2013, First published on October 1, 2012, 12 (1) 237-244; https://doi.org/10.1074/mcp.M112.021014
  • Open Access
    Normalization and Statistical Analysis of Multiplexed Bead-based Immunoassay Data Using Mixed-effects Modeling
    David C. Clarke, Melody K. Morris and Douglas A. Lauffenburger
    Molecular & Cellular Proteomics January 1, 2013, First published on October 15, 2012, 12 (1) 245-262; https://doi.org/10.1074/mcp.M112.018655
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    A Critical Assessment of Feature Selection Methods for Biomarker Discovery in Clinical Proteomics
    Christin Christin, Huub C. J. Hoefsloot, Age K. Smilde, B. Hoekman, Frank Suits, Rainer Bischoff and Peter Horvatovich
    Molecular & Cellular Proteomics January 1, 2013, First published on October 31, 2012, 12 (1) 263-276; https://doi.org/10.1074/mcp.M112.022566
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In this issue

Molecular & Cellular Proteomics: 12 (1)
Molecular & Cellular Proteomics
Vol. 12, Issue 1
1 Jan 2013
  • Table of Contents
  • Table of Contents (PDF)
  • Cover (PDF)
  • About the Cover
  • Index by author
  • Ed Board (PDF)
  • Front Matter (PDF)

Issue highlights

  • Activity-dependent Protein Dynamics Define Interconnected Cores of Co-regulated Postsynaptic Proteins
  • The Proteome of Copper, Iron, Zinc, and Manganese Micronutrient Deficiency in Chlamydomonas reinhardtii
  • A Bioinformatics Approach for Integrated Transcriptomic and Proteomic Comparative Analyses of Model and Non-sequenced Anopheline Vectors of Human Malaria Parasites
  • Comparative Proteomics of Two Life Cycle Stages of Stable Isotope-labeled Trypanosoma brucei Reveals Novel Components of the Parasite's Host Adaptation Machinery
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