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Molecular & Cellular Proteomics

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Table of Contents

July 2014; Volume 13,Issue 7

Report

  • You have access
    Realizing the Promise of Reverse Phase Protein Arrays for Clinical, Translational, and Basic Research: A Workshop Report
    Rehan Akbani, Karl-Friedrich Becker, Neil Carragher, Ted Goldstein, Leanne de Koning, Ulrike Korf, Lance Liotta, Gordon B. Mills, Satoshi S. Nishizuka, Michael Pawlak, Emanuel F. Petricoin, Harvey B. Pollard, Bryan Serrels and Jingchun Zhu
    Molecular & Cellular Proteomics July 1, 2014, First published on April 28, 2014, 13 (7) 1625-1643; https://doi.org/10.1074/mcp.O113.034918

Research

  • You have access
    Proteomic Analysis of the Epidermal Growth Factor Receptor (EGFR) Interactome and Post-translational Modifications Associated with Receptor Endocytosis in Response to EGF and Stress
    Jiefei Tong, Paul Taylor and Michael F. Moran
    Molecular & Cellular Proteomics July 1, 2014, First published on May 5, 2014, 13 (7) 1644-1658; https://doi.org/10.1074/mcp.M114.038596
  • You have access
    Identification of Small Ubiquitin-like Modifier Substrates with Diverse Functions Using the Xenopus Egg Extract System
    Li Ma, Aaron Aslanian, Huaiyu Sun, Mingji Jin, Yu Shi, John R. Yates and Tony Hunter
    Molecular & Cellular Proteomics July 1, 2014, First published on May 5, 2014, 13 (7) 1659-1675; https://doi.org/10.1074/mcp.M113.035626
  • You have access
    The Intraviral Protein Interaction Network of Hepatitis C Virus
    Nicole Hagen, Karen Bayer, Kathrin Rösch and Michael Schindler
    Molecular & Cellular Proteomics July 1, 2014, First published on May 5, 2014, 13 (7) 1676-1689; https://doi.org/10.1074/mcp.M113.036301
  • You have access
    Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels
    Philipp Mertins, Feng Yang, Tao Liu, D. R. Mani, Vladislav A. Petyuk, Michael A. Gillette, Karl R. Clauser, Jana W. Qiao, Marina A. Gritsenko, Ronald J. Moore, Douglas A. Levine, Reid Townsend, Petra Erdmann-Gilmore, Jacqueline E. Snider, Sherri R. Davies, Kelly V. Ruggles, David Fenyo, R. Thomas Kitchens, Shunqiang Li, Narciso Olvera, Fanny Dao, Henry Rodriguez, Daniel W. Chan, Daniel Liebler, Forest White, Karin D. Rodland, Gordon B. Mills, Richard D. Smith, Amanda G. Paulovich, Matthew Ellis and Steven A. Carr
    Molecular & Cellular Proteomics July 1, 2014, First published on April 9, 2014, 13 (7) 1690-1704; https://doi.org/10.1074/mcp.M113.036392
  • Open Access
    Enhanced Prediction of Src Homology 2 (SH2) Domain Binding Potentials Using a Fluorescence Polarization-derived c-Met, c-Kit, ErbB, and Androgen Receptor Interactome
    Kin K. Leung, Ronald J. Hause, John L. Barkinge, Mark F. Ciaccio, Chih-Pin Chuu and Richard B. Jones
    Molecular & Cellular Proteomics July 1, 2014, First published on April 12, 2014, 13 (7) 1705-1723; https://doi.org/10.1074/mcp.M113.034876
  • You have access
    Modulation of the Chromatin Phosphoproteome by the Haspin Protein Kinase
    Alessio Maiolica, Maria de Medina-Redondo, Erwin M. Schoof, Apirat Chaikuad, Fabrizio Villa, Marco Gatti, Siva Jeganathan, Hua Jane Lou, Karel Novy, Simon Hauri, Umut H. Toprak, Franz Herzog, Patrick Meraldi, Lorenza Penengo, Benjamin E. Turk, Stefan Knapp, Rune Linding and Ruedi Aebersold
    Molecular & Cellular Proteomics July 1, 2014, First published on April 14, 2014, 13 (7) 1724-1740; https://doi.org/10.1074/mcp.M113.034819
  • Open Access
    Proteomic Analysis of Altered Extracellular Matrix Turnover in Bleomycin-induced Pulmonary Fibrosis
    Martin L. Decaris, Michelle Gatmaitan, Simplicia FlorCruz, Flora Luo, Kelvin Li, William E. Holmes, Marc K. Hellerstein, Scott M. Turner and Claire L. Emson
    Molecular & Cellular Proteomics July 1, 2014, First published on April 16, 2014, 13 (7) 1741-1752; https://doi.org/10.1074/mcp.M113.037267
  • Open Access
    Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness
    Yansheng Liu, Jing Chen, Atul Sethi, Qing K. Li, Lijun Chen, Ben Collins, Ludovic C. J. Gillet, Bernd Wollscheid, Hui Zhang and Ruedi Aebersold
    Molecular & Cellular Proteomics July 1, 2014, First published on April 16, 2014, 13 (7) 1753-1768; https://doi.org/10.1074/mcp.M114.038273
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    Proteomic Analysis of Intact Flagella of Procyclic Trypanosoma brucei Cells Identifies Novel Flagellar Proteins with Unique Sub-localization and Dynamics
    Ines Subota, Daria Julkowska, Laetitia Vincensini, Nele Reeg, Johanna Buisson, Thierry Blisnick, Diego Huet, Sylvie Perrot, Julien Santi-Rocca, Magalie Duchateau, Véronique Hourdel, Jean-Claude Rousselle, Nadège Cayet, Abdelkader Namane, Julia Chamot-Rooke and Philippe Bastin
    Molecular & Cellular Proteomics July 1, 2014, First published on April 16, 2014, 13 (7) 1769-1786; https://doi.org/10.1074/mcp.M113.033357
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    Regulation Dynamics of Leishmania Differentiation: Deconvoluting Signals and Identifying Phosphorylation Trends
    Polina Tsigankov, Pier Federico Gherardini, Manuela Helmer-Citterich, Gerald F. Späth, Peter J. Myler and Dan Zilberstein
    Molecular & Cellular Proteomics July 1, 2014, First published on April 16, 2014, 13 (7) 1787-1799; https://doi.org/10.1074/mcp.M114.037705
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    Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC)-Based Strategy for Proteome-Wide Thermodynamic Analysis of Protein-Ligand Binding Interactions
    Duc T. Tran, Jagat Adhikari and Michael C. Fitzgerald
    Molecular & Cellular Proteomics July 1, 2014, First published on April 16, 2014, 13 (7) 1800-1813; https://doi.org/10.1074/mcp.M113.034702
  • Open Access
    Ferritin Heavy Chain in Triple Negative Breast Cancer: A Favorable Prognostic Marker that Relates to a Cluster of Differentiation 8 Positive (CD8+) Effector T-cell Response
    Ning Qing Liu, Tommaso De Marchi, Annemieke M. Timmermans, Robin Beekhof, Anita M.A.C. Trapman-Jansen, Renée Foekens, Maxime P. Look, Carolien H. M. van Deurzen, Paul N. Span, Fred C.G.J. Sweep, Julie Benedicte Brask, Vera Timmermans-Wielenga, Reno Debets, John W. M. Martens, John A. Foekens and Arzu Umar
    Molecular & Cellular Proteomics July 1, 2014, First published on April 17, 2014, 13 (7) 1814-1827; https://doi.org/10.1074/mcp.M113.037176
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    The Membrane Proteome of Sensory Cilia to the Depth of Olfactory Receptors
    Katja Kuhlmann, Astrid Tschapek, Heike Wiese, Martin Eisenacher, Helmut E. Meyer, Hanns H. Hatt, Silke Oeljeklaus and Bettina Warscheid
    Molecular & Cellular Proteomics July 1, 2014, First published on April 18, 2014, 13 (7) 1828-1843; https://doi.org/10.1074/mcp.M113.035378
  • You have access
    Evaluating Melanoma Drug Response and Therapeutic Escape with Quantitative Proteomics
    Vito W. Rebecca, Elizabeth Wood, Inna V. Fedorenko, Kim H. T. Paraiso, H. Eirik Haarberg, Yi Chen, Yun Xiang, Amod Sarnaik, Geoffrey T. Gibney, Vernon K. Sondak, John M. Koomen and Keiran S. M. Smalley
    Molecular & Cellular Proteomics July 1, 2014, First published on April 23, 2014, 13 (7) 1844-1854; https://doi.org/10.1074/mcp.M113.037424

Technological Innovation and Resources

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    Large Scale Analysis of Co-existing Post-translational Modifications in Histone Tails Reveals Global Fine Structure of Cross-talk
    Veit Schwämmle, Claudia-Maria Aspalter, Simone Sidoli and Ole N. Jensen
    Molecular & Cellular Proteomics July 1, 2014, First published on April 16, 2014, 13 (7) 1855-1865; https://doi.org/10.1074/mcp.O113.036335
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    Cell-specific Labeling Enzymes for Analysis of Cell–Cell Communication in Continuous Co-culture
    Christopher J. Tape, Ida C. Norrie, Jonathan D. Worboys, Lindsay Lim, Douglas A. Lauffenburger and Claus Jørgensen
    Molecular & Cellular Proteomics July 1, 2014, First published on May 12, 2014, 13 (7) 1866-1876; https://doi.org/10.1074/mcp.O113.037119
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    Functional Module Search in Protein Networks based on Semantic Similarity Improves the Analysis of Proteomics Data
    Desislava Boyanova, Santosh Nilla, Gunnar W. Klau, Thomas Dandekar, Tobias Müller and Marcus Dittrich
    Molecular & Cellular Proteomics July 1, 2014, First published on May 7, 2014, 13 (7) 1877-1889; https://doi.org/10.1074/mcp.M113.032839
  • You have access
    Elevated Plasma Albumin and Apolipoprotein A-I Oxidation under Suboptimal Specimen Storage Conditions
    Chad R. Borges, Douglas S. Rehder, Sally Jensen, Matthew R. Schaab, Nisha D. Sherma, Hussein Yassine, Boriana Nikolova and Christian Breburda
    Molecular & Cellular Proteomics July 1, 2014, First published on April 15, 2014, 13 (7) 1890-1899; https://doi.org/10.1074/mcp.M114.038455

Additions & Corrections

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    High resolution quantitative proteomics of HeLa cells protein species using stable isotope labeling with amino acids in cell culture (SILAC), two-dimensional gel electrophoresis (2DE) and nano-liquid chromatography coupled to an LTQ-Orbitrap mass spectrometer
    Bernd Thiede, Christian J. Koehler, Margarita Strozynski, Achim Treumann, Robert Stein, Ursula Zimny-Arndt, Monika Schmid and Peter R. Jungblut
    Molecular & Cellular Proteomics July 1, 2014, First published on July 1, 2014, 13 (7) 1900; https://doi.org/10.1074/mcp.A112.019372
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In this issue

Molecular & Cellular Proteomics: 13 (7)
Molecular & Cellular Proteomics
Vol. 13, Issue 7
1 Jul 2014
  • Table of Contents
  • Table of Contents (PDF)
  • Cover (PDF)
  • About the Cover
  • Index by author
  • Ed Board (PDF)

Issue highlights

  • Identification of Small Ubiquitin-like Modifier Substrates with Diverse Functions Using the Xenopus Egg Extract System
  • The Intraviral Protein Interaction Network of Hepatitis C Virus
  • Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels
  • Modulation of the Chromatin Phosphoproteome by the Haspin Protein Kinase
  • Evaluating Melanoma Drug Response and Therapeutic Escape with Quantitative Proteomics
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