Table of Contents

Research

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  Proteomic Analysis of the Epidermal Growth Factor Receptor (EGFR) Interactome and Post-translational Modifications Associated with Receptor Endocytosis in Response to EGF and Stress

  Jiefei Tong, Paul Taylor and Michael F. Moran

  Molecular & Cellular Proteomics July 1, 2014, First published on May 5, 2014, 13 (7) 1644-1658; https://doi.org/10.1074/mcp.M114.038596
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  Identification of Small Ubiquitin-like Modifier Substrates with Diverse Functions Using the Xenopus Egg Extract System

  Li Ma, Aaron Aslanian, Huaiyu Sun, Mingji Jin, Yu Shi, John R. Yates and Tony Hunter

  Molecular & Cellular Proteomics July 1, 2014, First published on May 5, 2014, 13 (7) 1659-1675; https://doi.org/10.1074/mcp.M113.035626
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  The Intraviral Protein Interaction Network of Hepatitis C Virus

  Nicole Hagen, Karen Bayer, Kathrin Rösch and Michael Schindler

  Molecular & Cellular Proteomics July 1, 2014, First published on May 5, 2014, 13 (7) 1676-1689; https://doi.org/10.1074/mcp.M113.036301
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  Ischemia in Tumors Induces Early and Sustained Phosphorylation Changes in Stress Kinase Pathways but Does Not Affect Global Protein Levels

  Philipp Mertins, Feng Yang, Tao Liu, D. R. Mani, Vladislav A. Petyuk, Michael A. Gillette, Karl R. Clauser, Jana W. Qiao, Marina A. Gritsenko, Ronald J. Moore, Douglas A. Levine, Reid Townsend, Petra Erdmann-Gilmore, Jacqueline E. Snider, Sherri R. Davies, Kelly V. Ruggles, David Fenyo, R. Thomas Kitchens, Shunqiang Li, Narciso Olvera, Fanny Dao, Henry Rodriguez, Daniel W. Chan, Daniel Liebler, Forest White, Karin D. Rodland, Gordon B. Mills, Richard D. Smith, Amanda G. Paulovich, Matthew Ellis and Steven A. Carr

  Molecular & Cellular Proteomics July 1, 2014, First published on April 9, 2014, 13 (7) 1690-1704; https://doi.org/10.1074/mcp.M113.036392
• Open Access

  Enhanced Prediction of Src Homology 2 (SH2) Domain Binding Potentials Using a Fluorescence Polarization-derived c-Met, c-Kit, ErbB, and Androgen Receptor Interactome

  Kin K. Leung, Ronald J. Hause, John L. Barkinge, Mark F. Ciaccio, Chih-Pin Chuu and Richard B. Jones

  Molecular & Cellular Proteomics July 1, 2014, First published on April 12, 2014, 13 (7) 1705-1723; https://doi.org/10.1074/mcp.M113.034876
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  Modulation of the Chromatin Phosphoproteome by the Haspin Protein Kinase

  Alessio Maiolica, Maria de Medina-Redondo, Erwin M. Schoof, Apirat Chaikuad, Fabrizio Villa, Marco Gatti, Siva Jeganathan, Hua Jane Lou, Karel Novy, Simon Hauri, Umut H. Toprak, Franz Herzog, Patrick Meraldi, Lorenza Penengo, Benjamin E. Turk, Stefan Knapp, Rune Linding and Ruedi Aebersold

  Molecular & Cellular Proteomics July 1, 2014, First published on April 14, 2014, 13 (7) 1724-1740; https://doi.org/10.1074/mcp.M113.034819
• Open Access

  Proteomic Analysis of Altered Extracellular Matrix Turnover in Bleomycin-induced Pulmonary Fibrosis

  Martin L. Decaris, Michelle Gatmaitan, Simplicia FlorCruz, Flora Luo, Kelvin Li, William E. Holmes, Marc K. Hellerstein, Scott M. Turner and Claire L. Emson

  Molecular & Cellular Proteomics July 1, 2014, First published on April 16, 2014, 13 (7) 1741-1752; https://doi.org/10.1074/mcp.M113.037267
• Open Access

  Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness

  Yansheng Liu, Jing Chen, Atul Sethi, Qing K. Li, Lijun Chen, Ben Collins, Ludovic C. J. Gillet, Bernd Wollscheid, Hui Zhang and Ruedi Aebersold

  Molecular & Cellular Proteomics July 1, 2014, First published on April 16, 2014, 13 (7) 1753-1768; https://doi.org/10.1074/mcp.M114.038273
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  Proteomic Analysis of Intact Flagella of Procyclic Trypanosoma brucei Cells Identifies Novel Flagellar Proteins with Unique Sub-localization and Dynamics

  Ines Subota, Daria Julkowska, Laetitia Vincensini, Nele Reeg, Johanna Buisson, Thierry Blisnick, Diego Huet, Sylvie Perrot, Julien Santi-Rocca, Magalie Duchateau, Véronique Hourdel, Jean-Claude Rousselle, Nadège Cayet, Abdelkader Namane, Julia Chamot-Rooke and Philippe Bastin

  Molecular & Cellular Proteomics July 1, 2014, First published on April 16, 2014, 13 (7) 1769-1786; https://doi.org/10.1074/mcp.M113.033357
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  Regulation Dynamics of Leishmania Differentiation: Deconvoluting Signals and Identifying Phosphorylation Trends

  Polina Tsigankov, Pier Federico Gherardini, Manuela Helmer-Citterich, Gerald F. Späth, Peter J. Myler and Dan Zilberstein

  Molecular & Cellular Proteomics July 1, 2014, First published on April 16, 2014, 13 (7) 1787-1799; https://doi.org/10.1074/mcp.M114.037705
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  Stable Isotope Labeling with Amino Acids in Cell Culture (SILAC)-Based Strategy for Proteome-Wide Thermodynamic Analysis of Protein-Ligand Binding Interactions

  Duc T. Tran, Jagat Adhikari and Michael C. Fitzgerald

  Molecular & Cellular Proteomics July 1, 2014, First published on April 16, 2014, 13 (7) 1800-1813; https://doi.org/10.1074/mcp.M113.034702
• Open Access

  Ferritin Heavy Chain in Triple Negative Breast Cancer: A Favorable Prognostic Marker that Relates to a Cluster of Differentiation 8 Positive (CD8+) Effector T-cell Response

  Ning Qing Liu, Tommaso De Marchi, Annemieke M. Timmermans, Robin Beekhof, Anita M.A.C. Trapman-Jansen, Renée Foekens, Maxime P. Look, Carolien H. M. van Deurzen, Paul N. Span, Fred C.G.J. Sweep, Julie Benedicte Brask, Vera Timmermans-Wielenga, Reno Debets, John W. M. Martens, John A. Foekens and Arzu Umar

  Molecular & Cellular Proteomics July 1, 2014, First published on April 17, 2014, 13 (7) 1814-1827; https://doi.org/10.1074/mcp.M113.037176
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  The Membrane Proteome of Sensory Cilia to the Depth of Olfactory Receptors

  Katja Kuhlmann, Astrid Tschapek, Heike Wiese, Martin Eisenacher, Helmut E. Meyer, Hanns H. Hatt, Silke Oeljeklaus and Bettina Warscheid

  Molecular & Cellular Proteomics July 1, 2014, First published on April 18, 2014, 13 (7) 1828-1843; https://doi.org/10.1074/mcp.M113.035378
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  Evaluating Melanoma Drug Response and Therapeutic Escape with Quantitative Proteomics

  Vito W. Rebecca, Elizabeth Wood, Inna V. Fedorenko, Kim H. T. Paraiso, H. Eirik Haarberg, Yi Chen, Yun Xiang, Amod Sarnaik, Geoffrey T. Gibney, Vernon K. Sondak, John M. Koomen and Keiran S. M. Smalley

  Molecular & Cellular Proteomics July 1, 2014, First published on April 23, 2014, 13 (7) 1844-1854; https://doi.org/10.1074/mcp.M113.037424