Table of Contents

Research

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  Changes in the Plasma Proteome of Manduca sexta Larvae in Relation to the Transcriptome Variations after an Immune Challenge: Evidence for High Molecular Weight Immune Complex Formation

  Yan He, Xiaolong Cao, Shuguang Zhang, Janet Rogers, Steve Hartson and Haobo Jiang

  Molecular & Cellular Proteomics April 1, 2016, First published on January 25, 2016, 15 (4) 1176-1187; https://doi.org/10.1074/mcp.M115.054296
• Open Access

  Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts

  Jonathan P. Anderson, James K. Hane, Thomas Stoll, Nicholas Pain, Marcus L. Hastie, Parwinder Kaur, Christine Hoogland, Jeffrey J. Gorman and Karam B. Singh

  Molecular & Cellular Proteomics April 1, 2016, First published on January 25, 2016, 15 (4) 1188-1203; https://doi.org/10.1074/mcp.M115.054502
• Open Access

  Proteome Dynamics: Tissue Variation in the Kinetics of Proteostasis in Intact Animals

  Dean E. Hammond, Amy J. Claydon, Deborah M. Simpson, Dominic Edward, Paula Stockley, Jane L. Hurst and Robert J. Beynon

  Molecular & Cellular Proteomics April 1, 2016, First published on February 1, 2016, 15 (4) 1204-1219; https://doi.org/10.1074/mcp.M115.053488
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  Application of Mass Spectrometry Profiling to Establish Brusatol as an Inhibitor of Global Protein Synthesis

  Steffan Vartanian, Taylur P. Ma, James Lee, Peter M. Haverty, Donald S. Kirkpatrick, Kebing Yu and David Stokoe

  Molecular & Cellular Proteomics April 1, 2016, First published on December 28, 2015, 15 (4) 1220-1231; https://doi.org/10.1074/mcp.M115.055509
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  Proteome-wide Identification of Novel Ceramide-binding Proteins by Yeast Surface cDNA Display and Deep Sequencing

  Scott Bidlingmaier, Kevin Ha, Nam-Kyung Lee, Yang Su and Bin Liu

  Molecular & Cellular Proteomics April 1, 2016, First published on January 4, 2016, 15 (4) 1232-1245; https://doi.org/10.1074/mcp.M115.055954
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  High-resolution Antibody Array Analysis of Childhood Acute Leukemia Cells

  Veronika Kanderova, Daniela Kuzilkova, Jan Stuchly, Martina Vaskova, Tomas Brdicka, Karel Fiser, Ondrej Hrusak, Fridtjof Lund-Johansen and Tomas Kalina

  Molecular & Cellular Proteomics April 1, 2016, First published on January 19, 2016, 15 (4) 1246-1261; https://doi.org/10.1074/mcp.M115.054593
• Open Access

  Predictions of Cleavability of Calpain Proteolysis by Quantitative Structure-Activity Relationship Analysis Using Newly Determined Cleavage Sites and Catalytic Efficiencies of an Oligopeptide Array

  Fumiko Shinkai-Ouchi, Suguru Koyama, Yasuko Ono, Shoji Hata, Koichi Ojima, Mayumi Shindo, David duVerle, Mika Ueno, Fujiko Kitamura, Naoko Doi, Ichigaku Takigawa, Hiroshi Mamitsuka and Hiroyuki Sorimachi

  Molecular & Cellular Proteomics April 1, 2016, First published on January 21, 2016, 15 (4) 1262-1280; https://doi.org/10.1074/mcp.M115.053413
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  Exosomes Secreted by Apoptosis-Resistant Acute Myeloid Leukemia (AML) Blasts Harbor Regulatory Network Proteins Potentially Involved in Antagonism of Apoptosis

  Anna Wojtuszkiewicz, Gerrit J. Schuurhuis, Floortje L. Kessler, Sander R. Piersma, Jaco C. Knol, Thang V. Pham, Gerrit Jansen, René J. P. Musters, Johan van Meerloo, Yehuda G. Assaraf, Gertjan J. L. Kaspers, Sonja Zweegman, Jacqueline Cloos and Connie R. Jimenez

  Molecular & Cellular Proteomics April 1, 2016, First published on January 22, 2016, 15 (4) 1281-1298; https://doi.org/10.1074/mcp.M115.052944
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  Proteomic Analysis Reveals a Novel Mutator S (MutS) Partner Involved in Mismatch Repair Pathway

  Zhen Chen, Mykim Tran, Mengfan Tang, Wenqi Wang, Zihua Gong and Junjie Chen

  Molecular & Cellular Proteomics April 1, 2016, First published on January 31, 2016, 15 (4) 1299-1308; https://doi.org/10.1074/mcp.M115.056093
• Open Access

  Direct and Absolute Quantification of over 1800 Yeast Proteins via Selected Reaction Monitoring

  Craig Lawless, Stephen W. Holman, Philip Brownridge, Karin Lanthaler, Victoria M. Harman, Rachel Watkins, Dean E. Hammond, Rebecca L. Miller, Paul F. G. Sims, Christopher M. Grant, Claire E. Eyers, Robert J. Beynon and Simon J. Hubbard

  Molecular & Cellular Proteomics April 1, 2016, First published on January 10, 2016, 15 (4) 1309-1322; https://doi.org/10.1074/mcp.M115.054288
• Open Access

  Mapping the O-Mannose Glycoproteome in Saccharomyces cerevisiae

  Patrick Neubert, Adnan Halim, Martin Zauser, Andreas Essig, Hiren J. Joshi, Ewa Zatorska, Ida Signe Bohse Larsen, Martin Loibl, Joan Castells-Ballester, Markus Aebi, Henrik Clausen and Sabine Strahl

  Molecular & Cellular Proteomics April 1, 2016, First published on January 13, 2016, 15 (4) 1323-1337; https://doi.org/10.1074/mcp.M115.057505
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  Phosphoproteomics Profiling of Tobacco Mature Pollen and Pollen Activated in vitro

  Jan Fíla, Sonja Radau, Andrea Matros, Anja Hartmann, Uwe Scholz, Jana Feciková, Hans-Peter Mock, Věra Čapková, René Peiman Zahedi and David Honys

  Molecular & Cellular Proteomics April 1, 2016, First published on January 20, 2016, 15 (4) 1338-1350; https://doi.org/10.1074/mcp.M115.051672
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  Rapid Oligo-Galacturonide Induced Changes in Protein Phosphorylation in Arabidopsis

  Bruce D. Kohorn, Divya Hoon, Benjamin B. Minkoff, Michael R. Sussman and Susan L. Kohorn

  Molecular & Cellular Proteomics April 1, 2016, First published on January 25, 2016, 15 (4) 1351-1359; https://doi.org/10.1074/mcp.M115.055368
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  High-Density Peptide Microarray Analysis of IgG Autoantibody Reactivities in Serum and Cerebrospinal Fluid of Multiple Sclerosis Patients

  Michael Hecker, Brit Fitzner, Matthias Wendt, Peter Lorenz, Kristin Flechtner, Felix Steinbeck, Ina Schröder, Hans-Jürgen Thiesen and Uwe Klaus Zettl

  Molecular & Cellular Proteomics April 1, 2016, First published on February 1, 2016, 15 (4) 1360-1380; https://doi.org/10.1074/mcp.M115.051664
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  Enhanced Purification of Ubiquitinated Proteins by Engineered Tandem Hybrid Ubiquitin-binding Domains (ThUBDs)

  Yuan Gao, Yanchang Li, Chengpu Zhang, Mingzhi Zhao, Chen Deng, Qiuyan Lan, Zexian Liu, Na Su, Jingwei Wang, Feng Xu, Yongru Xu, Lingyan Ping, Lei Chang, Huiying Gao, Junzhu Wu, Yu Xue, Zixin Deng, Junmin Peng and Ping Xu

  Molecular & Cellular Proteomics April 1, 2016, First published on February 3, 2016, 15 (4) 1381-1396; https://doi.org/10.1074/mcp.O115.051839
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  Comparative Study of Early Cold-Regulated Proteins by Two-Dimensional Difference Gel Electrophoresis Reveals a Key Role for Phospholipase Dα1 in Mediating Cold Acclimation Signaling Pathway in Rice

  Chenmin Huo, Baowen Zhang, Hui Wang, Fawei Wang, Meng Liu, Yingjie Gao, Wenhua Zhang, Zhiping Deng, Daye Sun and Wenqiang Tang

  Molecular & Cellular Proteomics April 1, 2016, First published on January 8, 2016, 15 (4) 1397-1411; https://doi.org/10.1074/mcp.M115.049759
• Open Access

  Sampling From the Proteome to the Human Leukocyte Antigen-DR (HLA-DR) Ligandome Proceeds Via High Specificity

  Geert P. M. Mommen, Fabio Marino, Hugo D. Meiring, Martien C. M. Poelen, Jacqueline A. M. van Gaans-van den Brink, Shabaz Mohammed, Albert J. R. Heck and Cécile A. C. M. van Els

  Molecular & Cellular Proteomics April 1, 2016, First published on January 13, 2016, 15 (4) 1412-1423; https://doi.org/10.1074/mcp.M115.055780
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  Towards Understanding Male Infertility After Spinal Cord Injury Using Quantitative Proteomics

  Barbara Ferreira da Silva, Chen Meng, Dominic Helm, Fiona Pachl, Jürgen Schiller, Emad Ibrahim, Charles M. Lynne, Nancy L. Brackett, Ricardo Pimenta Bertolla and Bernhard Kuster

  Molecular & Cellular Proteomics April 1, 2016, First published on January 26, 2016, 15 (4) 1424-1434; https://doi.org/10.1074/mcp.M115.052175