Table I

Proteins identified in the membrane surface fraction of A. pernix K1

Protein nameAccession numberORFMolecular massUnique peptidesUnique spectraTotal spectraSequence coverage
Da%
Nitrate reductase, α subunitgi|118431398APE_1288.1145,341.768781,11556.70
Oligopeptide ABC transporter, oligopeptide-binding proteingi|118431519APE_1583.1101,753.3364791450.90
ABC transporter, substrate-binding proteingi|118431538APE_1630.152,222.9233070861.40
Nitrate reductase, β subunitgi|118431399APE_1294.153,617.9313464764.00
TRAP transporter, solute-binding componentgi|118431744APE_2136.135,017.4182441464.10
Branched chain amino acid ABC transporter, branched chain amino acid-binding proteingi|14601070APE_091753,601.3252837748.00
Probable ABC transporter, substrate-binding proteingi|118431798APE_2254.164,664.7343836957.70
Dipeptide ABC transporter, dipeptide-binding protein DppAgi 14601949APE_225757,903.5161817431.50
V-type ATP synthase subunit Agi|118431026APE_0405.166,953.4333415757.10
TRAP transporter, solute-binding componentgi|118431921APE_2545.139,903.0131615447.70
ABC transporter, substrate-binding proteingi|118431437APE_1390.183,897.1212413637.80
Hypothetical protein APE_0969.1gi|118431278APE_0969.142,426.35812316.80
V-type ATP synthase subunit Bgi|118431025APE_0404.151,615.4151611641.00
ABC transporter, substrate-binding proteingi|118430849APE_0035.152,225.712128742.10
Putative ABC transporter, substrate-binding proteingi|118431313APE_1049.152,379.715219242.40
Branched chain amino acid ABC transporter, branched chain amino acid-binding proteingi|118431910APE_2521.147,195.215198146.40
Erythrocyte band 7 integral membrane protein homologgi|118431753APE_2153.130,551.810105037.30
Cell division control protein 48, AAA familygi|118431889APE_2239.182,109.516162723.70
Putative nitrate reductase, γ subunitgi|14601316APE_129733,976.3456119.00
Hypothetical protein APE_0061.1gi|118430860APE_0061.147,933.717174856.20
Hypothetical protein APE_0966.1gi|118431277APE_0966.178,471.316164325.80
Spermidine/putrescine ABC transporter, spermidine/putrescine-binding proteingi|118431267APE_0945.144,149.2794224.30
Phosphate ABC transporter, phosphate-binding proteingi|14600404APE_004540,287.311114739.90
V-type ATP synthase subunit Dgi|118431024APE_0402.124,695.410103146.40
Putative dehydrogenasegi|14602197APE_1043.141,853.9772622.60
Hypothetical protein APE_1719.1gi|118431565APE_1719.120,363.0333114.20
ABC transporter, substrate-binding proteingi|118430987APE_0304.190,222.416163023.80
Succinate dehydrogenase flavoprotein subunitgi|118431269APE_0950.165,561.114143127.10
NADH dehydrogenase subunit Igi|118431451APE_1419.121,306.5772632.30
Succinate dehydrogenase iron-sulfur subunitgi|14601092APE_094634,672.010103031.50
Branched chain α-keto acid dehydrogenase subunit E2gi|14601549APE_137144,963.513142845.60
Branched chain amino acid ABC transporter, ATP-binding proteingi|14601072APE_092126,411.110102049.40
Flagellin homologgi|14601713APE_190725,923.3332019.90
V-type ATP synthase subunit Egi|118431027APE_0409.122,124.3561433.50
Surface layer-associated protease precursorgi|14600834APE_0607142,047.911112011.00
Hypothetical protein APE_2352.1gi|118431843APE_2352.135,202.2882028.70
Oligopeptide ABC transporter, ATP-binding proteingi|14601497APE_157835,711.1771926.90
Pyruvate dehydrogenase E1 component, β subunitgi|14601550APE_167436,590.0771324.30
Branched chain amino acid ABC transporter, ATP-binding proteingi|14601071APE_091927,846.0991738.60
Surface layer proteingi|118431124APE_0609.1164,494.434173.16
Hypothetical protein APE_1758.1gi|118431578APE_1758.153,456.310111629.10
Hypothetical protein APE_1406.1gi|118431442APE_1406.137,745.2891625.70
Hypothetical protein APE_1117gi|14601190APE_111725,867.9661736.80
Da%
ABC transporter, substrate-binding proteingi|118431555APE_1688.130,468.1661528.80
DNA repair and recombination protein RadAgi|14600463APE_011935,302.8771625.10
Hypothetical protein APE_2146.1gi|118431749APE_2146.143,603.1551412.40
NADH dehydrogenase subunit Dgi|14601398APE_142246,622.6881223.40
Oligopeptide ABC transporter, ATP-binding proteingi|14601496APE_157642,614.0551323.30
Hypothetical protein APE 1973.1gi|118431669APE 1973.172,812.355159.67
MRP/NBP35 family proteingi|118430945APE_0230.133,704.7771322.30
Replication factor C small subunitgi|118431491APE_1522.137,327.2771325.80
Hypothetical protein APE_2212.1gi|118431782APE_2212.132,323.1771328.40
Probable arsenite oxidase large subunitgi|118431923APE_2556.1113,264.677109.24
50 S ribosomal protein L4Pgi|118430943APE_0228.130,198.2991235.70
Dihydrolipoyl dehydrogenasegi|118431550APE_1669.148,851.8881023.30
DNA double strand break repair rad50 ATPasegi|14600457APE_0110104,126.64467.83
Hypothetical protein APE_0558.1gi|118431107APE_0558.145,254.5551020.40
Membrane lipoprotein family proteingi|118431933APE_2592.148,132.8551112.10
Fibrillaringi|14601907APE_219626,682.4441019.70
ABC transporter, substrate-binding proteingi|118431638APE_1893.130,607.6441113.80
Proton glutamate symport proteingi|118431930APE_2583.144,583.34499.91
Molybdopterin oxidoreductase, molybdopterin binding subunitgi|14602175APE_2610131,525.66695.24
Rieske iron-sulfur proteingi|118431568APE_1724.128,721.7341017.00
ABC transporter, substrate-binding proteingi|118431402APE_1303.146,381.455915.20
Pyruvate dehydrogenase E1 component, α subunitgi|118431551APE_1677.142,305.077721.50
Proteasome β subunitgi|118431082APE_0507.121,569.056826.10
Hypothetical protein APE_1868.1gi|118431625APE_1868.127,454.855823.50
NuoC homologgi|14601399APE_142621,286.744823.80
Translation initiation factor IF 2 subunit αgi|118431043APE_0436.131,460.955517.30
NuoB homologgi|118431453APE_1428.122,131.455729.60
Long chain fatty acid-CoA ligasegi|118431813APE_2284.161,293.644510.40
Putative ABC transporter, ATP-binding proteingi|118431315APE_1055.127,089.944612.40
Cell division control protein 48, AAA familygi|14601365APE_136781,228.83349.23
Thermosome α subunitgi|118431257APE_0907.160,357.755510.10
Hypothetical protein APE_1123.1gi|118431334APE_1123.141,032.855516.40
Proteasome subunit αgi|14601414APE_144928,822.055623.30
2-Oxoglutarate ferredoxin oxidoreductase subunit βgi|14601428APE_147234,393.855518.10
Hypothetical protein APE_2139.1gi|118431745APE_2139.123,962.944519.30
Oligopeptide ABC transporter, permease proteingi|14601499APE_158240,673.64469.92
Hypothetical protein APE_0145gi|14600482APE_014527,638.433610.60
δ-Aminolevulinic acid dehydratasegi|118431821APE_2300.138,718.644413.30
Hypothetical protein APE_1952.1gi|118431658APE_1952.151,685.34459.94
Small conductance mechanosensitive channel MscSgi|118431624APE_1867.130,693.933413.30
Acetyl-CoA acetyltransferasegi|14602032APE_238443,437.634411.40
Acidic ribosomal protein P0gi|118431764APE_2171.137,255.844420.50
50 S ribosomal protein L2Pgi|14600538APE_021825,723.344421.40
Thioredoxingi|14600860APE_064137,064.933410.00
Hypothetical protein APE_2435gi|14602061APE_243529,134.133311.80
Putative oxidoreductase, aldo/keto reductase familygi|14601541APE_165936,170.633314.30