Table I Proteins identified in 48-protein UPS

Triplicate runs were analyzed against a database of the UPS proteins and contaminants and against the complete human database and contaminants. PEP, posterior error probability; Percent seq., percent protein sequence coverage; Cyt, cytochrome; PPIA, peptidyl-prolyl cis-trans isomerase A; BID, BH3-interacting domain death agonist; HARS, histidyl-tRNA synthetase; CK-M, creatine kinase M-type.

Protein nameUniProt accession no.UPS databaseHuman database
Intensity (× 107)No. peptidesPEPPercent seq.Intensity (× 107)No. peptidesPEPPercent seq.
Annexin A5P0875835.2170e+0057.424.087e−7029.4
Antithrombin-IIIP0100840.9200e+0046.126.2100e+0030.8
BIDP5595713.180e+0052.812.570e+0041.5
CAH- 2P0091822.6110e+0052.921.794e−7349.6
CAH-1P0091525.9120e+0063.119.980e+0046.4
CatalaseP0404053.0290e+0062.944.0190e+0044.6
CK-MP0673235.6210e+0067.725.9130e+0042.0
Complement C5P010312.922e−4228.41.911e−210.8
CRPP027416.551e−4622.66.451e−1821.0
Cyt-b5P0016718.470e+0055.714.158e−7049.3
Cyt-cP9999910.188e−3255.85.021e−1923.8
EGFP011330.412e−0224.1
FABP3P0541320.4106e−9476.512.852e−5745.9
GelsolinP0639632.0230e+0040.720.6130e+0026.6
GST-A1P0826317.2115e−1844.85.628e−058.9
GST-PP0921115.9110e+0057.410.660e+0035.7
HARSP1208147.9260e+0057.936.4180e+0048.1
Hemoglobin-αP699055.456e−4543.33.132e−2730.3
Hemoglobin-βP688719.396e−8669.97.971e−4955.1
H-RasP0111214.1100e+0058.714.094e−6955.0
IFN-γP015796.240e+0044.16.240e+0038.0
IGF-2P013445.339e−8373.14.524e−1110.6
IL-8P101450.517e−0322.2
LactalbuminP0070910.972e−1682.17.432e−0718.3
LactotransferrinP0278859.1410e+0067.347.2290e+0044.7
LeptinP4115919.850e+004919.750e+0043.1
Lysozyme CP6162610.390e+0078.58.253e−7844.6
Microglobulin-β2P6176920.830e+0042.420.832e−10534.4
MyoglobinP0214415.070e+0054.212.750e+0050.0
NEDD8Q158437.048e−5245.76.835e−2434.6
NQO1P1555912.388e−3924.96.742e−1917.5
NQO2P1608327.8100e+0055.720.670e+0044.2
PDGF-BP011272.135e−1034.9
Peroxiredoxin 1Q068326.7129e−8073.218.272e−4041.2
PPIAP6293715.280e+0060.511.454e−3640.6
RETbp-4P027535.761e−3730.23.339e−1415.4
SerotransferrinP0278746.9350e+0064.236.7260e+0046.8
Serum albuminP0276884.7370e+0071.964.0290e+0063.1
SOD1P0044111.990e+0075.28.250e+0059.7
SUMO1P6316529.2150e+0046.43.431e−0719.9
Synuclein-γO7607026.2120e+0089.818.070e+0063.0
TauP1063645.4180e+0060.540.7140e+0057.1
ThioredoxinP105998.952e−3246.47.733e−1729.5
TNF-αP0137518.970e+0063.716.260e+0039.5
UB2E1P519652.532e−1218.61.922e−098.3
UBC9P6327910.272e−38504.634e−1916.8
UBE2CO0076214.080e+006715.884e−7067.6