Table II Verification of the relative expression level for 25 proteins, randomly selected from 121 differentially abundant proteins at the 99% confidence level, by IHC profiles found in HPA
Accession numberProtein descriptionSpIAntibodyIHC staining intensityVerification
Cellular compartmentStrongModerateWeakNegative
P55268Laminin subunit β-2−0.778CAB000053Normal myoepithelium3000Yes
Tumor epithelium00011
P53621Coatomer subunit α0.576HPA028024Normal epithelium0300Yes
Tumor epithelium7400
Q14764Major vault protein0.865HPA002321Normal epithelium0030Yes
Tumor epithelium4610
P53396ATP-citrate synthase0.635HPA022434Normal epithelium0030Yes
Tumor epithelium1820
P06753Tropomyosin α-3 chain0.673HPA009066Normal epithelium0011Yes
Tumor epithelium0182
P19971Thymidine phosphorylase0.558HPA001072Normal epithelium0003Yes
Tumor epithelium2730
P49257Protein ERGIC-530.564HPA002320Normal epithelium0200Yes
Tumor epithelium2730
P35222Catenin β-1−0.631CAB000108Normal epithelium3000No
Tumor epithelium6500
Q01995Transgelin−0.567CAB001447Normal myoepithelium2000Yes
Tumor epithelium0017
Q9BXN1Asporin0.667HPA024230Normal epithelium0200No
Tumor epithelium00101
Q16822Phosphoenolpyruvate carboxykinase [GTP], mitochondrial0.667CAB018734Normal epithelium0003Yes
Tumor epithelium0335
P42224Signal transducer and activator of transcription 1-α/β0.574HPA000931Normal epithelium0020Yes
Tumor epithelium1431
Q9Y6C2EMILIN-1−0.667HPA002822Normal myoepithelium0300Yes
Tumor epithelium00012
P51911Calponin-1−1.000CAB000007Normal myoepithelium2000Yes
Tumor epithelium0028
P19012Keratin, type I cytoskeletal 15−0.817HPA024554Normal epithelium2000Yes
Tumor epithelium10110
Q12907Vesicular integral-membrane protein VIP360.590HPA003927Normal epithelium0003Yes
Tumor epithelium2612
Q9UN36Protein NDRG2−0.889HPA002896Normal epithelium2000Yes
Tumor epithelium0190
P49419α-aminoadipic semialdehyde dehydrogenase−0.760HPA023296Normal epithelium0020No
Tumor epithelium0190
P09211Glutathione S-transferase P−0.922HPA019779Normal epithelium0300No
Tumor epithelium2504
Q9HB71Calcyclin-binding protein0.667HPA025753Normal epithelium0200Yes
Tumor epithelium7400
Q9ULZ3Apoptosis-associated speck-like protein containing a CARD0.691CAB006853Normal epithelium0200Yes
Tumor epithelium7300
P68133Actin, α skeletal muscle0.698CAB000045Normal epithelium0003Yes
Tumor epithelium0109
P27338Amine oxidase [flavin-containing] B−0.688HPA002328Normal epithelium2000No
Tumor epithelium9300
P04083Annexin A1−0.743HPA011271Normal epithelium0200Yes
Tumor epithelium00012
P12429Annexin A3−0.904HPA013398Normal epithelium0300No
Tumor epithelium0804