Table I Hash identifiers to access raw mass spectrometry files for each MudPIT run

Individual runs are organized by cell fraction, extraction, and protease to generate peptides for analysis. MM, microsomal membrane.

Cell fractionExtraction/digestionSample name used in supplemental Tables S1–S5At https://www.proteomecommons.org/tranche/downloads.jsp, the raw mass spectrometry files can be downloaded using the following hash identifiers. In all cases, there are two files ranging from 100 MB to 1.5 GB that are archived and compressed tar.gz files: use tar −xzf Linux command to uncompress to *.RAW files (1 per MudPIT step)
PBMC NEsNaOH/CNBr-trypsinHsNaOH-NE_NT_lymphocytes_CNBrTi_14mWjs+LvJQb4FUwQD8O3X5MkkLit6/3bHJfJZK3owfOX4jwMtCUQFhRv95ORUTT8gT5HKx6RdVxGlCjy/nOHw/pjLeMAAAAAAAAGUg==
PBMC NEsNaOH/trypsinHsNaOH-NE_NT_lymphocytes_Ti_15aTYg17TJJuGrxJ/wra09yMtKGoVwtlgYWi+EK7Np92HD73ed5417f2/x0ndBFzSjLxwFldZheB74gYe829QI8CDDiwAAAAAAAAFrQ==
PBMC NEsNaOH/proteinase KHsNaOH-NE_NT_lymphocytes_PK_1MBcaJI2EOh07R/EEOLUVt85OXiVbebs7/PiRkN3HvoazDKMmEZxw53RLG96Vx9pgGhIxM0Dxk2O05V0QiEiQi0+oUqoAAAAAAAAGlQ==
PBMC NEsSalt-detergent/trypsinHsSD-NE_NT_lymphocytes_Ti_1rgMMQvG4dw8tJ9WeX0DHi0k6vvEclU34F8mzsnExggk9AbENEtfaBPxvTuBlhJ/iAnDU7XQLLNr8fJV2W72mziU6KrMAAAAAAAAFsQ==
PBMC NEsSalt-detergent/proteinase KHsSD-NE_NT_lymphocytes_PK_1bQnUrYCBdxRh8wM32qka9Jg80U4ow7Z0HK+SmdbPbxPVo3TzLgeTqCWgzKPDYAkUltDGXybehz2ZFVq2EJ+G/et3AiwAAAAAAAAGmQ==
PHA-treated PBMC NEsNaOH/CNBr-trypsinHsNaOH-NE_PHA_lymphocytes_CNBrTi_1/0iTLp3cH9L60CR441Dxg/REq/GKoYRz9Kd/QloEd+3h265EsD1S213sb8ic267lWS5gGDdQHV3xR+T7qZ36K4+O/ZUAAAAAAAAGXA==
PHA-treated PBMC NEsNaOH/trypsinHsNaOH-NE_PHA_lymphocytes_Ti_1gKqv8i+5tPSdMhZM9IZW93nSIXTeQUpYhgyc6SEXUgYJAj+AqeF49+VneqJ5RTQQrEnOM9t2ANPZQJWRZAJaKY0uMBAAAAAAAAAFtQ==
PHA-treated PBMC NEsNaOH/proteinase KHsNaOH-NE_PHA_lymphocytes_PK_1pi3VbyTD3uo8WvUrRgmJn0phN7KpMp5yNInoWpvXSInLu/N0cNKjTY79b3okjGy6+e5zSkQATmN2dQzQ4giyJMdVmvMAAAAAAAAGnw==
PHA-treated PBMC NEsSalt-detergent/trypsinHsSD-NE_PHA_lymphocytes_Ti_15nw33XkNPBMdAuQNg6HRD2MPyTa7osxDObK2cxSdAWtVHsRV+sC3kW6omUK3PrvBNa4WCarVz3Hnskjrbn4e7JuU6+sAAAAAAAAFuw==
PHA-treated PBMC NEsSalt-detergent/proteinase KHsSD-NE_PHA_lymphocytes_PK_1QPGdJRqWff6OE9isf9e9zSnB9D0xmV0rQzyR7+Jy5Z6hZZNQDzuGYKNO5+vZJFLxasQ7/Tx4lWHp/Jd5yztAJ095NuUAAAAAAAAGpA==
Liver MMsNaOH/CNBr-trypsinMmNaOH-MM_liver_CNBrTi_1Y+ITtCT8NMlD0geT1lJiVcUIdaOHJmM08umEd9yhyGOq/rqjAkuft0Txw1yeznfC8iXNbkfR/0v35Y0qLBhVyvrgaSwAAAAAAAAGBg==
Liver MMsNaOH/CNBr-trypsinMmNaOH-MM_liver_CNBrTi_22KBwq4C/GrCKjyrUMRoRdZ55hzMbJr3wc+O3kZqwnFLV/90uaYuK64FxNneldmnQ7HO1dRNBaNG51EGUnz3EV18OrusAAAAAAAAGAA==
Liver MMsNaOH/trypsinRnNaOH-MM_liver_Ti_1bpp6s9dcwf3lzclX0cPDJCJ01f97QesmXl6anF4PVaUNuNmfdIRrtqkELKcBM6l2X08B/d69Hys6o4vUq66TYHBc4CQAAAAAAAAFaQ==
Liver MMsNaOH/trypsinRnNaOH-MM_liver_Ti_27wO8Wz/6iv2rZU5WACjlm1sY5sIkiMWTC5X2+Tjyt5SN+fPoCR/LxuWiD3DetTh+oTWNkU7wd6gp2c3XKx8Oybxl6HMAAAAAAAAFaQ==
Liver MMsNaOH/trypsinRnNaOH-MM_liver_Ti_3ElAxLpoQLOHTnIp0FpP1FeRrEckCbdz0VHUt4h9ISX8v8sMEoutFOarYhBK3+d+jUv1Ihe5rRfXhhR7UcXqx0Bicw4sAAAAAAAAFaQ==
Liver MMsNaOH/trypsinRnNaOH-MM_liver_Ti_4cnJ7dLVqF73eGbFqgZyTn3Egb/XL2RzMWrP7gXG41VfvbRri1eHa1uaHWjvMjbXGdvpq4XCQoz1u+gU//rR/MO7/hckAAAAAAAAFaQ==
Liver MMsNaOH/proteinase KRnNaOH-MM_liver_PK_1ENorMHs0SFhkyD9Y5w4gbEh2bVCdl7gT5SF6dnp0zebaxoFG7kYpPTwYFQXGmhPBjKR/ZG8ewsnnSZZcEzmJZvYq8ecAAAAAAAAGVA==
Liver MMsNaOH/proteinase KRnNaOH-MM_liver_PK_2H36mWYfElnzq6ISRTgc6v6VJVs4WxrUkCNa0LTmufeP+OoMPQaxkkBxn6nHlEv8iCgcw8ghryUbgIY9i+Udjk4k8XnsAAAAAAAAGUg==