Table II Embedding of putative specific interaction partners within contaminants at low SILAC M/L ratios

A selection of protein groups from the Pol2C data set with low SILAC M/L ratios (<5) are listed with their PFL frequencies and ranked by M/L ratio from highest to lowest. Protein groups with a PFL value below the threshold (40%) and belonging to the R2TP/prefoldin-like complex are bold.

Gene namesAccession numbersNormalized SILAC M/L ratioPFL frequency value
KRT19IPI00479145.25.03100
UXTIPI00170862.1, IPI00002646.1, IPI00553080.13.8516
ACTN4IPI00013808.1, IPI00908458.1, IPI00845465.1, IPI00908776.1, IPI00793285.1, IPI00903019.1, IPI00018829.2, IPI00217047.4, IPI00217048.1, IPI00217044.13.4352
RUVBL2IPI00009104.7, IPI00909925.12.7026
TUBB8IPI00292496.12.0177
PDRG1IPI00027887.41.8116
HIST2H2ABIPI00216730.3, IPI00829588.11.7781
PFDN2IPI00006052.31.726
VIMIPI00418471.6, IPI00552689.1, IPI00465084.6, IPI00793184.1, IPI00013164.4, IPI00910602.1, IPI00021751.5, IPI00217507.5, IPI00869219.1, IPI00853115.1, IPI00908745.1, IPI00237671.9, IPI00868727.1, IPI00166205.2, IPI00477227.3, IPI00001453.2, IPI00853283.1, IPI00744385.2, IPI00909238.11.6297
RUVBL1IPI00021187.4, IPI00788942.1, IPI00902501.1, IPI00796459.11.6129
FLNCIPI00178352.5, IPI00413958.4, IPI00455021.31.4477
PFDN6IPI00005657.11.2813