Table I Protein identification in replicate runs. The number of proteins is given for each single 480 min run analyzed alone and with transfer of identifications using the “match between runs” feature in MaxQuant. Matching was performed for two samples, three samples, and for each of the experiments with the three others
Protein in a single runProteins in two runsProteins in three runsMatched runs
Experiment 14529512053485272
Experiment 246225292
Experiment 345425328
Matched experiment46545286