Table II A, Peptide identification from HeLa lysate triplicate analysis on a Q Exactive (90 min gradient)
MS spectraMSMS spectraIdentifications [%]Unique peptidesProteinsIsotope clusters
HeLa (1)54273520337.23122982513146138
HeLa (2)50983591138.35128302601143556
HeLa (3)52743534838.23125602557144336
Σ Triplicates37.94162552864
B, Peptide identification from HeLa lysate triplicate analysis on an LTQ Orbitrap Velos (90 min gradient)
MS spectraMSMS spectraIdentifications [%]Unique peptidesProteinsIsotope clusters
HeLa (1)20121981855.64104201895125738
HeLa (2)21021910356.6498551843120553
HeLa (3)20051963456.37103471906126717
Σ Triplicates56.21144012242