Table I SRM parameters of SRM assays of proteins for sample amount normalization
Gene nameSwissprot numberSequenceQ1 (m/z)Q3 (m/z)Ion typeCE (V)Linear rangeR2Lower limit of quantitation (amol)
IKKaO15111IQLPIIQLR547.358529.345y42620,0000.999650
547.358642.429y523
547.358739.482y619
547.358852.566y718
MAVSQ7Z434VSASTVPTDGSSR632.312719.331y72020,0000.9995250
632.312818.400y816
632.312919.447y917
632.3121006.479y1020
RelAQ04206TPPYADPSLQAPVR756.396867.504y82720,0000.9990250
756.396982.531y927
756.3961053.568y1027
756.3961313.684y1230
IRF3Q14653LVGSEVGDR466.242446.235y424100,0000.999850
466.242575.278y526
466.242719.331y726
RIG-IO95786VVFFANQIPVYEQQK905.480891.457y7262,0000.99892500
905.4801004.541y824
905.4801132.599y926
905.4801246.642y1027
TBK1Q9UHD2TTEENPIFVVSR696.362817.493y72420,0000.9988250
696.362931.535y824
696.3621060.578y923
696.3621189.621y1023
IKBAP259633LEPQEVPR484.264628.341y52020,0000.999250
484.264725.394y620
484.264854.436y720
484.264967.520y820
IKKRQ9Y6K9AQVTSLLGELQESQSR873.455976.469y82710,0000.9984500
873.4551033.490y927
873.4551146.574y1027
873.4551259.658y1127
873.4551346.690y1227
p52/p100Q00653DSGEEAAEPSAPSR701.808743.368y72020,0000.9976250
701.808814.405y820
701.808885.442y920
701.8081014.484y1027
p100Q00653ALLDYGVTADAR632.83689.357y72020,0000.9985250
632.83852.421y820
632.83967.447y920
632.831080.531y1021
  • Notes: Masses listed are for the native forms of the peptides.

  • CE, collision energy; Q, quadropole; R2, coefficient of determination.