Table I Quantified protein copy number per HeLa cell for immuno-SILAC and PrEST-SILAC. Copy numbers are shown for each replicate, along with the median copy number, relative standard deviation (RSD), and number of peptides used for quantification
Gene nameCopy number replicate 1Copy number replicate 2Copy number replicate 3Median copy numberRSD (%)Number of peptides
Immuno-SILAC
    ACOT7128383899887649823099887642.92
    ANXA1666495298333756362332666495225.24
    ANXA3221924022983194650459229831945.21
    BLVRB2148052-3002937257549523.51
    CANT1-70703426675668535.01
    CAPG30781342579694-282891412.51
    CLPP12087941087915777082108791521.71
    DAP314988651016070900236101607027.96
    DECR1--588225588225-1
    DIMT1--235127235127-1
    ERLIN1529872923508101371992350831.32
    P4HA127725830783443168630783424.11
    PDIA59484416612918679016612932.33
    PRPF43068903160673429043160675.81
    PTPN1763589103520368672776358922.12
    SERPINB688567725392031477373147737351.32
    SIL1-117997-117997-1
    SLC25A24231715020997231239592209972330.21
    STUB157364647490649030549030510.41
    UGDH19327750119260530550119249.51
PrEST-SILAC
    ACOT7771360117008695576895576820.74
    ANXA11251663910077946117255161172551610.914
    ANXA3189995924288804058745242888040.212
    BLVRB77975583648462456377975514.74
    CANT1-67847-67847-2
    CAPG223804725358002762024253580010.54
    CLPP101756970575663981570575625.63
    DAP3329798-63889048434445.12
    DECR1------
    DIMT133776940835834291634291610.86
    ERLIN155999796384480379480379426.25
    P4HA1111452162746773344373344331.011
    PDIA513408925386215231915231925.54
    PRPF441150927496756639841150934.96
    PTPN15200075426025970395426027.25
    SERPINB6576320974111126908997411137.09
    SIL19636315582911153311153325.51
    SLC25A241077749101500792575310150077.64
    STUB17195336042016927426927429.04
    UGDH100074388875074642588875014.55
  • Number of peptides: the total number of different peptides used for the quantification.