Table I Performance of ProLuCID, Mod-A, and PepExplorer on the four PFU datasets. The first number represents the number of proteins having at least two spectral counts identified under a 1% FDR. The number in parentheses is the average sequence coverage
Number of proteins (Average Coverage)
PFUPFU_Gap_25_Substitution_15PFU_Gap_20_Substitution_10PFU_Gap_15_Substitution_8
ProLuCID585 (0.16)45 (0.04)7 (0.04)0
Mod-A499 (0.16)63 (0.06)45 (0.05)0
PepExplorer311 (0.17)190 (0.17)143 (0.17)102 (0.17)