Table II List of supported file formats in PRIDE Inspector Toolsuite, including the list of the exporters explicitly tested and supported (by September 2015)
File formatSoftware providerNew in PRIDE InspectorAvailable panels in PRIDE InspectorUsed Application Programming Interface
Mass spectra file formatsmzMLProteoWizard and othersNoMetadatajmzML
mzXMLYesMass SpectrumjmzReader
mzDataYesSummary ChartsjmzReader
Peak list files (mgf, ms2, dta, pkl, apl)YesMass Spectrum, Summary ChartsjmzReader
Identification file formatsPRIDE XMLPRIDE Converter 2Nopride-jaxb
MS-GF+
Mascot (version 2.4)
Scaffold
ProteinPilotMetadata
MyrimatchProtein
ProteoAnnotatorPeptide
mzIdentMLPeptideShaker (X!Tandem, MS Amanda, OMSSA, Tide, Andromeda and Comet)YesMass Spectrum (if mass spectra file is associated)jmzIdentML
PEAKSSummary Charts
IsoQuant
Pep2pro
mzTab (version 1.0)jmzTab converterMetadatajmzTab
Mascot (version 2.5)YesProtein
IsoQuantPeptide
Mass Spectrum (if mass spectra file is associated)
Summary Charts
Quantification file formatsmzTab (version 1.0)Mascot (version 2.5)YesMetadatajmzTab
Protein
Peptide
PRIDE XMLPRIDE Converter 2NoMass Spectrum (if peak list file is associated)pride-jaxb
Quantification
Summary Charts