Table IV Quantitative accuracy for all libraries using TP yeast proteins. For each pairwise comparison the mean listed represents the geometric mean of the abundance ratios between the two conditions calculated using protein peak areas for all yeast proteins identified as differentially expressed; the standard deviation (S.D.) of the same ratios is shown in brackets
TP RESULTSComparisonComparisonComparison
2% to 5%2% to 10%5% to 10%
Expect 0.41Expect 0.21Expect 0.52
Mean (S.D.)Mean (S.D.)Mean (S.D.)
Lib10.45 (0.11)0.27 (0.11)0.43 (0.11)
Lib20.47 (0.06)0.23 (0.06)0.49 (0.07)
Lib2_30.47 (0.11)0.26 (0.10)0.44 (0.11)
Lib2_40.37 (0.16)0.25 (0.12)0.43 (0.10)
Lib2_5_60.37 (0.14)0.20 (0.12)0.41 (0.11)
Lib2_70.40 (0.14)0.23 (0.11)0.36 (0.13)
Lib5_60.44(0.10)0.22 (0.11)0.43 (0.10)