Table I Characterization and preservation of protein and mRNA network modules.
Protein modulemRNA moduleOverlap numberOverlap p valuePreservation Z-score
p-blackm-black77 (77)10.95
p-bluem-blue111 (69)7.32 × 10−65.3
p-brownm-brown126 (84)5.93 × 10−66.8
p-greenm-green120 (60)1.13 × 10−147.7
p-magentam-magenta77(55)0.121.8
p-pinkm-pink70 (41)2.55 × 10−42.1
p-purplem-purple45 (22)2.96 × 10−40.6
p-redm-red27 (33)1−0.54
p-turquoisem-turquoise108 (108)10.8
p-yellowm-yellow117 (68)3.04 × 10−83.9
  • For each protein network, significance of overlap with the corresponding mRNA module was presented in column 3–4. The expected number of overlapping genes was presented in parentheses. p values were adjusted for multiple comparisons. Column 5 measured module preservation.