Table II

Proteins found comparing a single MS/MS analysis to m/z window segmentation

Comparison of peptide information from a single analysis 400–2000 full MS scan of the five peak fractions (fractions 21, 34, 39, 46, and 53) (Fig. 2) and three m/z segmentations of the same five peak fractions with static exclusion list.

400–2000 m/z full MS scan500–1050, 1000–1550, and 1500–2000 m/z full MS scans
Total peptide hits20142179
Proteins determined by ≥3 peptidesa2658
Proteins determined by 1–2 peptidesa2583
  • a Passing data filters in Table I.