Table II Potential fusion-derived peptides identified in leukemia cell lines
SampleFusion geneChr.Fusion junctionJunction boundaryPeptide typePeptide sequence# of spectra
JurkatFAM133B:CDK67–792581506–92774831Exon-ExonFusion junction peptidePTW:LFDVCTVSR2
JurkatFAM24B:CUZD110–10122855745–122839231Exon-ExonFrameshift peptideKGLKVTHRPAC1
K562 (Slavoff)HNRNPA1P13:HNRNPA2B15–7136429638–26193641Exon-ExonFusion junction peptideALVVVDMVAVGMAIMDMV:VEDLDMATR1
K562 (Slavoff)HNRNPA1P58:HNRNPA2B16–724002209–26195899Exon-ExonPeptide of pseudogeneQEMVSASSSQRGR3
K562 (Berger)RPL14:NCOR23–1240462013–124402538Exon-ExonFusion junction peptideASPKKA:AAAAAAAH2
K562 (Berger)C20orf203:NOL4L20–2032632893–32527913Exon-5'UTRFrameshift peptideLGEDLGV2