Table II Spiked-in Universal Protein Standard benchmarking results. The “ground truth” indicates the total number of unique GO terms with which the UPS proteins are annotated. The MSE reflects the error in the estimate provided by each method (lower is better) and is defined in Equation 3
MethodNumber of unique go terms quantifiedMSE
Ground truth3,130
metaQuantome1,71625.2
Summarization71226.8