Table IV Comparison of the performance using metagenome assembly from MegaHit and MetaSpades as the reference on SD3-MG dataset
MegaHitMetaSpades
Number of contigs111,739446,773
Total bases (MB)78166
Contig only (PSM/peptide)43650 (11173)40161 (10337)
Graph2Pro (PSM/peptide)63178 (17452)57760 (17651)
Graph2Pro + Var2pep (PSM/peptide)74317 (21662)71366 (22043)