Table I Gene sets reduction after weighted set cover for three different enrichment analyses
Data typeGene setsNumber of enriched gene setsNumber of enriched gene sets after set coverGenes covered
Colorectal cancer-associated genes (ORA)GO Biological Process91021210,220
Gene expression in Basal vs Luminal A breast cancer (GSEA)MSigDB C2 Canonical Pathways123511,716
Protein abundance in Basal vs Luminal A breast cancer (GSEA)MSigDB C2 Canonical Pathways97471,432