TABLE III

TagIdent search of the A. thaliana genomes

TagIdent (ca.expasy.org/tools/tagident.html) was used to search Swiss-Prot and TrEMBL for translated genes from the three A. thaliana genomes. Each search was performed in the indicated mass ranges. The Swiss-Prot and TrEMBL entry names are used in the table. The searches resulted in 712 responses of which 133 are localized to the chloroplast (underlined in the table). 51 of the chloroplast-localized responses are for known proteins associated with the thylkoid membranes.

Mass rangeTagIdent results from Swiss-Prot and TrEMBL (PI = 7, PI range = 10.00, OS = ARATH)
3000–50002SS1-ssu, 2SS2-ssu, 2SS3-ssu, 2SS4-ssu, MT1A, MT1B, MT1C, PETG, PETL, PSAI, PSBF, PSBI, PSBJ, PSBK, PSBL, PSBM, PSBN, PSBX, PSBY-1, PSBY-2, RL41, THG4
5000–7000AFP1, AFP2, AFP3, IF1C, ITI2, ITI3, ITIF, KIN1, KIN2, PSAJ, RK32, RL39, RL40, THG1, THG2, THG3, YCF9
7000–90002SS4-Isu, ACP2, ACP3, ATP5, ATP9, ATPH, CLV3, DCAM, EC1, EC2, GAS1, GAS2, GAS3, IM08, ITI1, ITI6, MT2A, MT2B, PSAC, PSBH, RK28, RK33, RL38, RPBX, RS28, RS30, RUXG, S1FA, S61B
9000–1100015E1, 2SS1-Isu, 2SS2-Isu, 2SS3-Isu, A9, ACBP, ACP1, ACPM, CH10, EM6, FER2, FER, GAS4, IM09, IM10, IM13, LTP2, LTP5, NLT1, NULM, PLAS, PLAT, POC1, POC2, PSAN, PSBE, PSBR, R27A, RK23, RL37, RLA1, RR15, RR16, RR17, RR19, RUXF, Y331, YC15
11000–13000CWPX, CYC, DAD1, DAD2, ERH, NULC, RA2A, RA2B, RL44, RR14, RR18, SMT3, SR09, SUI1, T2AG, TBCA, THH1, U123, U136, U139, VAG1, VAG2, VAG3, Y103, Y150, Y20L
13000–15000ATPE, DHX1, GCSH, GCSI, NU3C, NU3M, OLE3, PFD4, PR1, PRO1, PRO2, PRO3, PRO4, PRO5, R12A, R12B, R12C, R311, RBS1, RBS2, RBS3, RBS4, RK14, RK20, RL34, RPBY, RR13, RS1A, RS20, RS26, RT12, SODC, SR14, THF1, THH2, THH3, THH4, THM1, THM2, THM3, VATF, YCF3
15000–17000CAL2, CAL4, CAL6, CY51, CY52, DSR5, EM1, FRDA, GRP7, GRP8, NDK1, PFD2, PFD5, PSQ1, PSQ2, RI21, R122, RBFA, RK16, RK24, RL23, RL27, RL2A, RR11, RR8, RS16, RS17, RS24, SODP, THM4, UBC9, UBCA, VATL
17000–19000ABP1, ATP4, BCB, CDI8, COPT, CYP1, CYP2, DH18, DR1, F825, GC5L, HS11, HS12, HS13, HS21, MGN, N7BM, NDK3, NUGC, OLE1, PETD, R11A, R11B, RK21, RK22, RK9, RL12, RL21, RL24, RR7, RS15, RS18, RT07, SP18, TCH2, TCTP, TL16, TL17, UBC1, UBC2, UBC3, UBC7, UBCY
19000–2100012S1, 12S2, AG31, AIG2, APT1, ARF1, ARF2, ARF3, AXI1, AXI2, AXI4, AXI5, AXIK, AXIS, CYP4, DH14, DHX2, GSHY, HEVL, H2SM, NDK2, NU6C, NUIC, NUKM, OM24, PSP1, R111, RL11, RL18, RM16, RPB7, RT19, UBC6, Y314
21000–23000APT2, ARF4, ARF5, ATPF, ATPO, AXI3, AXI6, AXIJ, BAS1, CB24, CBP2, CD13, CHIC, CLPP, COP9, GRP, HL3B, MI25, NUGM, NUIM, OM21, OM23, PFD3, PR5, PSP2, R112, RAB7, RAC1, RAC2, RAC3, RAC4, RAC5, RERA, RERB, RHA1, RK15, RL9, RM05, RNS3, RT10, SARA, SARB, SODM, T215, TF21, TF22, TL30, UBC4, UBC5, UMPK, UPP, YCF4
23000–2500014P, A494, AG12, ARA1, ARA2, ARA3, ATPI, BCCP, CAHC, CALL, CB21, CB22, CYB6, D101, ERF4, GTH1, GTH3, GTH4, GTH5, GTH6, GTH7, GTHB, GTHC, GTZ2, HL3A, HS2C, MAD2, MRAY, NU6M, OM22, OSL3, PIMT, PIST, PRCE, PSB1, RAN2, RB1A, RB1B, RB1C, REHY, RERC, RL10, RL13, RL15, RNS1, ROC1, RR4, SODF, SYBR, TLPH, V281, V282, YB87
25000–27000AG11, AG14, AG17, AG19, AG1Y, AXI7, AXIB, AXIC, AXID, AXIG, AXIH, CF1, D102, EF1B, EF1C, ERD2, ERF2, GL1, GS27, GS28, GTXA, GTZ1, HIS2, HT14, IF6, IFE1, IM17, KAD, KAP1, KAP2, MPU1, NUKC, ORN PS51, PS52, PSA2, PSO1, PSO2, PUR3, RAN1, RAN2, RD19, RK4, RR2, RR3, SSRA, TIPG, TIPR, TPIS, VATE, Y136, Y278, YC22
27000–2900012S2, 143E, 143K, 143L, 143P, 3MG, AG13, AGL1, AGL2, AGL4, AGL5, AGL6, AGL8, AG, APX1, AXIA, BI1, CAH2, CEMA, FABG, GCH2, GL2C, GL2M, H11, H12, HAT7, IDI1, MER5, MSRA, PROC, PS61, PS62, PS71, PS72, PSA3, PSA4, RAIL, RL2, RL7, RNS2, ROC2, ROC3, RPIA, RS6, RU2A, TIPA, TPIC, TPIS, VSP1, VSP2, Y350
29000–3100012S1, 143C, 143H, 143M, 143N, 143O, 143U, AG15, AGL3, AGL9, AP1, ARA5, ATP3, AXII, CHIA, CNX3, COQ3, COX3, DH10, DH47, GBF4, HAT5, HAT9, HIS7, HT22, IPYR, KC2D, PCN1, PCN2, PIR2, PIR4, PS11, PS12, RK2, RL7A, RS2, RS3A, TL29, VATD, WC1A, WC1B, WC1C, WC2A, WC2B, WC2C, Y230
31000–33000AOX2, ATH7, AX1B, AX1C, CHIT, CHMU, COPE, CTNS, CX32, CYF, D3H1, DCAM, E132, HAT1, HAT2, HSF4, IDI2, KC2B, KC2C, KC2E, PIR3, PSY, PUR5, QORL, RS31, RSP4, STS1, STX, SUCA, TH14, TRPC
33000–35000ADT1, ADT2, ASPG, ATH4, ATH5, AX1A, CC2A, CYSK, ERF5, FSTL, GBF1, GGH, GGPP, HAT3, HSF6, IFRH, ISPE, MGHG, MDHI, MDHM, OM40, P2A1, P2A2, PIR1, PPX1, PPX2, PRSC, RL0A, RL0B, RL0C, RL5, SFR1, STS3, TF2B, URIC
35000–37000ACC1, ATH6, ATP1, ATP2, AXI8, AXI9, CAPA, CC2B, CPPM, CYSL, D100, D111, DAP1, DAP2, DEGP, FABH, FN3X, G3PA, G3PC, GBLP, HBPB, HEM3, HKL2, IF32, MDHC, MDHD, ODPB, ORC6, OTC, P2A3, P2A4, P2A5, PERC, PERE, PORA, PORB, PORC, PP11, PP12, PP13, PP14, PP15, PP16, PP17, PP18, RD21, RP3A, RP3B, S17P, SPD1, STXK, TCH3, TRB1
37000–39000ALF, ARG1, ARG2, CAD2, CCSA, CGD1, CYSN, DCUP, DMC1, DPNP, FLS1, GAE2, GAE3, GBF2, GLN1, HEM6, KPR1, LIPB, MTD1, MTD2, MTDH, NRL1, NRL2, NRL3, NRL4, P1, P2, PDA6, PIP, PSBA, PYRB, PYRC, RPOA, SPD2, YB30
39000–40000CAD1, F16P, FPP1, FPP2, FTSZ, G3PB, GAE1, HSF7, KC21, KC22, KC23, KPPR, NU1C, ODPA, PFTA, PSBD, RD22, RIR2, YJ83