Table II

Membrane proteins identified by 1D SDS-PAGE coupled with microcapillary LC-MS/MS

RefSeq IDaNo. of TMHsbTopologyc
gi|156071501i102–124o
gi|156071611o6–28i
gi|156071901i89–111o
gi|156072144i16–38o231–253i274–296o306–328i
gi|156072861o235–257i
gi|156072999o5–27i34–53o58–77i90–112o127–149i170–192o197–219i226–245o249–268i
gi|156073086o15–37i56–78o93–115i155–177o197–219i240–262o
gi|156073111i7–29o
gi|156073173i29–51o56–78i166–188o
gi|156073181o26–48i
gi|156073191i79–101o
gi|156073216i25–47o218–240i269–291o301–323i330–352o392–414i
gi|156073413i7–29o33–55i75–97o
gi|156073682i5–27o319–341i
gi|156074241i72–94o
gi|156074251i45–67o
gi|1560743111i129–151o155–177i184–202o206–228i235–254o258–280i328–347o352–374i381–400o404–426i447–469o
gi|156074321o431–453i
gi|156074332i13–30o35–57i
gi|156074796o5–24i71–93o113–135i148–170o180–202i214–231o
gi|156074831o497–519i
gi|156075241o5–24i
gi|156075331o387–409i
gi|156075591i7–29o
gi|156076201i113–135o
gi|156076461o345–367i
gi|156076962i33–55o131–153i
gi|156078262i9–31o35–57i
gi|156080151i5–27o
gi|156080411o4–26i
gi|156080711o380–402i
gi|156081096i141–163o216–238i375–397o402–424i718–737o741–760i
gi|156081252i13–32o69–91i
gi|156082182i95–117o199–221i
gi|156083742i85–107o112–134i
gi|156084101i7–24o
gi|156084445o30–47i85–107o127–149i189–211o221–240i
gi|156084461o32–54i
gi|156084471i5–23o
gi|156084886o293–315i336–358o407–429i434–456o520–542i549–571o
gi|156085021i60–82o
gi|156085081i20–37o
gi|156085552i20–39o54–71i
gi|156086141o138–160i
gi|156086193o15–37i67–86o307–329i
gi|156086261i7–29o
gi|156087294i25–47o74–96i108–130o167–189i
gi|156089201i54–76o
gi|1560893210i136–158o168–190i203–220o224–246i251–270o274–296i357–379o411–433i440–462o477–499i
gi|156090231i20–42o
gi|156091141i155–177o
gi|156091295i160–182o204–226i378–400o410–432i710–732o
gi|156091887i21–39o43–60i67–89o99–121i128–150o165–187i206–228o
gi|156093323i97–119o134–156i202–224o
gi|156093339o46–68i115–134o144–166i178–200o215–237i267–289o333–355i375–397o412–434i
gi|156093373i31–53o73–95i116–138o
gi|156093511i164–186o
gi|156093611i13–35o
gi|156094213i7–29o44–66i78–95o
gi|156094261i7–29o
gi|156094624i19–36o51–73i86–108o123–145i
gi|156094634o46–68i81–103o129–151i195–217o
gi|156094823i7–26o162–181i609–631o
gi|156097004i16–38o231–253i274–296o306–328i
gi|156097191i47–69o
gi|156097236i66–88o191–208i215–237o241–263i301–323o328–350i
gi|156097251o4–21i
gi|156097341i2–24o
gi|156097626i13–35o45–64i77–99o109–131i138–160o207–229i
gi|156100581i5–27o
gi|156100821i7–24o
gi|156101061o20–42i
gi|156102272o5–24i37–59o
gi|156102384o20–42i174–196o225–247i268–290o
gi|156103297i17–39o59–81i113–135o169–191i212–229o255–277i284–306o
gi|1561040910o36–58i60–82o102–124i129–151o205–227i264–286o306–328i341–360o364–386i393–424o
gi|156105261i13–32o
gi|156105731o73–95i
gi|156107201i13–35o
gi|156107462o10–27i111–133o
gi|156108181i7–29o
gi|156108191i7–29o
gi|156109401i19–41o
gi|156109427o55–72i92–114o118–140i161–183o216–238i245–264o284–301i
gi|1561104615i40–62o66–88i105–127o142–164i176–198o213–235i255–276o291–313i343–365o375–397i410–432o437–459i480–497o517–539i979–1001o
  • a Shown are RefSeq identifications from the National Center for Biotechnology Information; novel identifications are shown in bold.

  • b The number of transmembrane helices predicted by TMHMM 2.0.

  • c The topology predicted by TMHMM 2.0 is given as the amino acid position (number) of the transmembrane helices from the N terminus of the protein. “i” indicates that the loop is on the inside, and “o” indicates that the loop is on the outside.