Table I

Sequence coverage (given by the number of unique peptides identified) of proteins that were identified both on LTQ and LCQ Deca

Tryptic peptides from the Jurkat T cell extracts corresponding to the 45–51-kDa region were analyzed.

ProteinaNumber of peptides identified
top 2 on LCQ Decatop 2 on LTQtop 5 on LTQ
GPN:AF343348_11b1
GP:AK024002_111
GPN:AK035340_111
GPN:AY223417_112
GPN:BC018664_1121
GPN:BC036816_111
GPN:Z70680_1011
PIR1:KIHUG111
PIR2:T3454511
SW:ABL2_HUMAN11
SW:ALBU_HUMAN12
SW:CAP1_HUMAN11
SW:CGL1_HUMAN133
SW:CPS1_HUMAN11
SW:DCT2_HUMAN157
SW:DD48_HUMAN167
SW:DJA1_HUMAN158
SW:EFTU_HUMAN119
SW:FEN1_HUMAN123
SW:FUMH_HUMAN1811
SW:GLYM_HUMAN155
SW:GRF1_HUMAN11
SW:HE47_HUMAN168
SW:HS72_HUMAN123
SW:HS9B_HUMAN186
SW:IF36_HUMAN178
SW:K22E_HUMANc112
SW:METK_HUMAN134
SW:NPL1_HUMAN142
SW:OST4_HUMAN144
SW:PSD6_HUMAN135
SW:PSDB_HUMAN199
SW:PSDC_HUMAN1711
SW:PTD4_HUMAN136
SW:PUR6_HUMAN1713
SW:ROF_HUMAN135
SW:SEP6_HUMAN144
SW:SEP7_HUMAN177
SW:SNXE_HUMAN11
SW:ST13_HUMAN185
SW:TBA2_HUMAN131
SW:TBB2_HUMAN155
SW:TBB5_HUMAN111
SW:TBBX_HUMAN11
SW:THIL_HUMAN111
SW:TPP1_HUMAN111
SW:TRAL_HUMAN12
SW:UCR2_HUMAN198
SW:YB1_HUMAN142
GPN:BC021139_14614
PIR2:T124564510
SW:6PGD_HUMAN4811
SW:ACTA_HUMAN758
SW:ACTB_HUMAN457
SW:ATPB_HUMAN81515
SW:CO1A_HUMAN958
SW:CRTC_HUMAN3119
SW:DBPA_HUMAN333
SW:EF11_HUMAN71012
SW:EF1G_HUMAN81415
SW:ENOA_HUMAN141416
SW:GDIA_HUMAN364
SW:GDIB_HUMAN388
SW:IDHP_HUMAN3812
SW:IF35_HUMAN449
SW:IF41_HUMAN71114
SW:KPY1_HUMAN41114
SW:LA_HUMAN568
SW:P2G4_HUMAN687
SW:PGK1_HUMAN131717
SW:PLSL_HUMAN41515
SW:RBB4_HUMAN326
SW:RL4_HUMAN558
SW:SAHH_HUMAN3711
SW:TBA1_HUMAN101212
SW:TBB1_HUMAN151717
SW:TRYP_PIGc345
GPN:BC056886_1223
SW:ERF1_HUMAN2107
SW:HS9A_HUMAN2815
SW:PDA6_HUMAN2911
  • a Acession numbers in NCBI, SWISS-Prot, or PIR database.

  • b The protein was not identified in this mode of acquisition.

  • c Autocatalysis products from trypsinand peptides from contaminants like keratin were included as they werepart of the identical samples analyzed.