Table IV

Number of unique identified proteins from CAD, CADIS, and combined ECD/CAD (complementary pairs)

Two different threshold numbers of identified peptides are listed, 1 and 2. All peptides used for protein identification had a Mascot score above the significant level of 34. A relative increase in protein identifications in the complementary pair and deisotoped CAD approach compared to CAD-only is given in parentheses.

CADCADISComplementary pairs
1 peptide>1 peptide1 peptide>1 peptide1 peptide>1 peptide
252114309 (+23%)148 (+30%)414 (+64%)256 (+125%)