Table V

Overall results in protein identification of data from E. coli lysate achieved by using complementary fragmentation techniques compared to deisotoped CAD and CAD

The relative change in the result is given in parentheses.

CADCADISComplementary pairs
Average protein score169183 (+8%)277 (+64%)
Average number of peptides identifying a protein3.43.2 (−6%)5.3 (+56%)
Average Mascot search time (s)459402 (−12%)368 (−20%)