Table II

The 33 proteins uniquely identified in hESCs and >3-fold enriched in mESCs compared with Dif-mESCs according to the number of peptide identifications per protein

Gene symbol, IPI accession number, and (human) protein name as well as the number of unique peptide identifications, associated Mascot score, and peptide ratio are indicated for each protein.

Gene symbolIPI accession no.Protein name, humanNo. of peptidesMascot scorePeptide ratio, mouse
HumanMouseHumanMouseHumanMouseHumanMouse
ACAA1ACAA1 IPI00012828 IPI00121833 3-Ketoacyl-CoA thiolase110614153.3
ACTL6AACTL6A IPI00003627 IPI00323660 Actin-like protein 6A552892775.0
AD-0032610205E22RIK IPI00022375 IPI00153664 Adrenal gland protein AD-003442212174.0
AHSA1AHSA1 IPI00030706 IPI00153740 Activator of 90-kDa heat shock protein ATPase homolog 1581913444.0
ARS2ARS2 IPI00337663 IPI00224643 Arsenite resistance protein 2562202783.0
BCAS2BCAS2 IPI00025178 IPI00316184 Putative spliceosome-associated protein26652836.0
BZW1BZW1 IPI00005681 IPI00132388 Basic leucine zipper and W2 domains 110104323973.3
C10ORF1191110007A13RIK IPI00414458 IPI00153724 Hypothetical protein FLJ13081231111663.0
CNAP12810406C15RIK IPI00299524 IPI00172226 Condensin subunit 1762861883.0
CSIGRSL1D1 IPI00008708 IPI00226149 Cellular senescence-inhibited gene protein391224744.5
DNAJC7DNAJC7 IPI00329629 IPI00331385 DnaJ (Hsp40) homolog subfamily C member 7472003923.5
EIF2S2EIF2S2 IPI00021728 IPI00116302 Eukaryotic translation initiation factor 2 subunit 227962923.5
GA17GA17 IPI00102069 IPI00115580 DJ69B10.1261033003.0
HAT1HAT1 IPI00024719 IPI00226930 Histone acetyltransferase type B catalytic subunit491664269.0
MBD3MBD3 IPI00439194 IPI00131067 Methyl-CpG-binding protein 3542502584.0
ME2ME2 IPI00011201 IPI00115977 NAD-dependent malic enzyme351872715.0
MSH6MSH6 IPI00384456 IPI00310173 DNA mismatch repair protein MSH61525585100212.5
MYBBP1AMYBBP1A IPI00005024 IPI00330812 MYB-binding protein 1A112451112573.0
NDUFB10NDUFB10 IPI00220060 IPI00121288 NADH dehydrogenase (ubiquinone) 1β subcomplex 10642341904.0
NDUFS1NDUFS1 IPI00178677 IPI00308882 NADH dehydrogenase (ubiquinone) Fe-S protein 1582773414.0
NSGNL3 IPI00306380 IPI00222461 Nucleostemin281303368.0
NSFNSF IPI00006451 IPI00311934 Vesicle-fusing ATPase261073013.0
NUP153NUP153 IPI00292059 IPI00330624 Nucleoporin 153 kDa351471835.0
PES1PES1 IPI00003768 IPI00110428 Pescadillo homolog 1361593086.0
PPATPPAT IPI00029534 IPI00229849 Amidophosphoribosyltransferase precursor361423166.0
PPM1GPPM1G IPI00006167 IPI00117072 Protein phosphatase 2C γ isoform583284258.0
PPP2R2APPP2R2A IPI00332511 IPI00462007 Serine/threonine protein phosphatase 2A27673723.5
RFC5RFC5 IPI00031514 IPI00132481 Replication factor C (activator 1) 519644183.0
SDHASDHA IPI00305166 IPI00230351 Succinate dehydrogenase (ubiquinone) flavoprotein subunit2121355583.0
SLC25A3SLC25A3 IPI00215777 IPI00124771 Solute carrier family 25 member 361327761513.0
SNRPB2SNRPB2 IPI00029267 IPI00132576 Small nuclear ribonucleoprotein polypeptide B„461712823.0
TOP2ATOP2A IPI00478232 IPI00122223 DNA topoisomerase IIα2030864133910.0
ZNF9CNBP1 IPI00430812 IPI00137229 Cellular nucleic acid-binding protein6102414045.0