Table III

The 15 proteins uniquely identified in mESCs and >3-fold enriched in hESCs compared with Dif-hESCs according to the number of peptide identifications per protein

Gene symbol, IPI accession number, and (human) protein name as well as the number of unique peptide identifications, associated Mascot score, and peptide ratio are indicated for each protein.

Gene symbolIPI accession no.Protein name, humanNo. of peptidesMascot scorePeptide ratio, mouse
BACHBACH IPI00010415 IPI00125939 Cytosolic acyl-coenzyme A thioester hydrolase934441914.5
CADCAD IPI00301263 IPI00380280 CAD protein231311206245.8
COPS3COPS3 IPI00025721 IPI00131870 COP9 complex subunit 3321741313.0
DNM1LDNM1L IPI00037283 IPI00172221 Dynamin-like protein dymple isoform662712663.0
FEN1FEN1 IPI00026215 IPI00314879 Flap endonuclease-183342964.0
KIAA01742400003C14RIK IPI00024660 IPI00109389 Protein KIAA017482332864.0
KIAA1007CNOT1 IPI00166010 IPI00420537 KIAA1007 protein isoform A994844034.5
MGC53522610528A17RIK IPI00063242 IPI00226387 Hypothetical protein MGC5352351771933.0
PSIP1PSIP1 IPI00028122 IPI00115257 Lens epithelium-derived growth factor p75843651554.0
PSMC4PSMC4 IPI00020042 IPI00108895 Proteasome (prosome, macropain) 26 S subunit ATPase 41385423803.3
PRPF8PRPF8 IPI00007928 IPI00121596 PRP8 protein25149195636.3
PRPSAP2PRPSAP2 IPI00003168 IPI00153950 Phosphoribosyl pyrophosphate synthetase-associated protein 2893493924.0
SMARCC1SMARCC1 IPI00234252 IPI00125662 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin subfamily C member 11144361395.5
SSBSSB IPI00009032 IPI00134300 Sjogren syndrome antigen B (autoantigen La)1395384253.3
TAF15TAF15 IPI00020194 IPI00264652 TATA-binding protein-associated factor 2N642711673.0