Table II

S. typhimurium proteins observed for each method

Totals for each method preparation are listed in bold in the corresponding row. Counts and percentages of proteins shared between the methods are shown (percentaages are derived by dividing the value by the maximum value for that row). Total peptides that are only found in one method are listed in the farthest right column. The aggregate values are shown for the different culture methods, but the trends held when individual conditions were analyzed. Therefore, they constituted pseudoreplicate analyses.

Protein list
GlobalSolubleInsolubleRapigestUnique to method
Global 1,999 1,802 (90%)1,609 (81%)1,847 (92%)12
Soluble1,802 (89%) 2,030 1,501 (74%)1,804 (89%)67
Insoluble1,609 (86%)1,501 (81%) 1,864 1,661 (89%)97
Rapigest1,847 (87%)1,804 (85%)1,661 (78%) 2,121 63
Total 2,343